Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst6g01867 ATGGCCGACGGTCCGGCGAGCCCAGGCGGCGGAAGCCACGAGAGCGGTGACCATAGCCCTCGCTCCAACATAAGGGAGCAGGACAGGTTCCTTCCCATCGCTAACATCAGCCGCATCATGAAGAAGGCGCTTCCCGCCAACGGAAAAATCGCCAAGGATGCCAAAGAAACTGTTCAGGAATGCGTCTCCGAGTTTATCAGCTTCATCACCAGCGAGGCCTCTGATAAGTGCCAGAGAGAGAAGAGGAAGACTATTAACGGTGATGATTTGCTCTGGGCAATGGCGACTCTCGGTTTCGAGGATTATATTGATCCCTTGAAGATTTACCTCACAAGATACAGAGAGATGGAGGGTGACACCAAGGGTTCAGCAAAGGGTGGAGACGCTTCTGCTAAAAAAGATGTTCAACCAAGTCCTAATGTTCAGCTTGCTCATCAAGGTTCTTTCTCACAAGGCGTTAATTACACTAACTCTCAGGGTCAACATATGATGGTTCCTATGCAAGGTCCAGAGTAG 516 0.5039 MADGPASPGGGSHESGDHSPRSNIREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKIYLTRYREMEGDTKGSAKGGDASAKKDVQPSPNVQLAHQGSFSQGVNYTNSQGQHMMVPMQGPE 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst6g01867 171 SUPERFAMILY Histone-fold 27 129 IPR009072 GO:0046982
Arst6g01867 171 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 17 149 IPR027113 GO:0001228|GO:0006355|GO:0016602
Arst6g01867 171 MobiDBLite consensus disorder prediction 135 164 - -
Arst6g01867 171 MobiDBLite consensus disorder prediction 1 27 - -
Arst6g01867 171 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 30 94 IPR003958 -
Arst6g01867 171 Gene3D Histone, subunit A 17 151 IPR009072 GO:0046982
Arst6g01867 171 FunFam Nuclear transcription factor Y subunit B-3 19 143 - -
Arst6g01867 171 ProSitePatterns NF-YB/HAP3 subunit signature. 61 77 IPR003956 GO:0005634|GO:0006355|GO:0043565
Arst6g01867 171 PRINTS CCAAT-binding transcription factor subunit A signature 96 114 - -
Arst6g01867 171 PRINTS CCAAT-binding transcription factor subunit A signature 58 76 - -
Arst6g01867 171 PRINTS CCAAT-binding transcription factor subunit A signature 77 95 - -
Arst6g01867 171 MobiDBLite consensus disorder prediction 119 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst6g01867 Arst-Chr6 22547175 22551287 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst6g01867 1 169 CCAAT-HAP3 Transcription Factor Family AT2G37060 78.531 1.67e-89 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Arst6g01867 CBFD_NFYB_HMF 7.6e-28 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst6g01867 K08065 - gmx:100798667 337.035
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst6g01867 6 22547175 22551287 Arst6g01867 6 22547175 22551287 ECH
Arst1g00721 1 7227409 7230831 Arst6g01867 6 22547175 22551287 ECH
Arst7g01563 7 17637040 17639181 Arst6g01867 6 22547175 22551287 ECH