LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Arst6g01858	ATGAGAAAACTGCTCTCTTCTCTCCGTCTCGCACTCTTGTTCTCTACACTGGAGTCTCGAGCTCGAAGCCCTTCCTCCCACCACCTGGCAGCGCCGCCGAAGCCTTATTCCCAGCGAGCATCGACCCAGCCGCGCTCTTCCCAGCAGCACCGACCCAGCAATGCTCTTCCCAGCAGCGCTCTTCCCAGCGAGTACCGACCCAGCAGCGTCGAAGCCTTCTTCCTAGTGACAGCGAGCACGGACCCAGCAGCGTTCTTCCCAGTAGCGCCGAAGAGAGGCTTTGCCACTCACCCTAGAAGCATTGCAGAGAGGGTACGAAGAGCACGAATTAGCGAAAGAATCAAGAAATTGCAAGGCCTTCTCCCGAAATCTGACAAGTTCATCCTGAAAGTTGAAATCCTATGCGGTATGTATCGAGATATAGGATGCATCCAGAGATATGCAAATCCTCTTCACTGCATTTTGATGACAATAAAGCATAAAATAGGAGCTAATAATGTATATTTGATGGATTGCTGTTGGTTGTTGACTTGTTTATTTCATTGTTGA	549	0.5009	MRKLLSSLRLALLFSTLESRARSPSSHHLAAPPKPYSQRASTQPRSSQQHRPSNALPSSALPSEYRPSSVEAFFLVTASTDPAAFFPVAPKRGFATHPRSIAERVRRARISERIKKLQGLLPKSDKFILKVEILCGMYRDIGCIQRYANPLHCILMTIKHKIGANNVYLMDCCWLLTCLFHC	182

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Arst6g01858	182	Gene3D	-	94	146	IPR036638	GO:0046983
	Arst6g01858	182	PANTHER	TRANSCRIPTION FACTOR BHLH83-RELATED	37	126	-	-
	Arst6g01858	182	MobiDBLite	consensus disorder prediction	23	63	-	-
	Arst6g01858	182	ProSiteProfiles	Myc-type, basic helix-loop-helix (bHLH) domain profile.	94	144	IPR011598	GO:0046983
	Arst6g01858	182	MobiDBLite	consensus disorder prediction	36	63	-	-
	Arst6g01858	182	SUPERFAMILY	HLH, helix-loop-helix DNA-binding domain	96	152	IPR036638	GO:0046983

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Arst6g01858	Arst-Chr6	22228997	22234276	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Arst6g01858	86	151	Basic Helix-Loop-Helix Transcription Factor Gene Family	AT4G09180	51.515	5.37e-13	63.5

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	bHLH	Arst6g01858		HLH	0.00024	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Arst6g01858	-		-	adu:107493392	354.369