Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst6g01840 ATGGCCAACGACTCGTTTTTGTTTTCCGGCATTCGTTTCGACAGAAAGAAGTTCGGAAACGACATTGCCAGGTTCGGGAAGAACAAACCCATTGATGACGATACCGCCCTCAAGATTACAGACCCTGTTGAACTCAAAACTGAGAAAACAATGGGGGAACAATTCCAACAGAGACCACCTTCTTCGAAGAAGCGGAAGCGCAAGGGAACCTCTTCCGATGCGGTTGAAGGATTCAGTGTATTTAGAAATTCTGCTTCTGCGGCGGATCCTGTGGATAAATCGAATGATGCAGTGAGAGCTGATGATGAGGCCATTCAGCTGAAGAAGGAACACAATAGGCAACTTGAGCGAGATGCTATATTCAGGAAGAAGAATAACATCCATGTGGCTGGGTATAACGTGCCATCCCCGCTTCAAAGTTTTGATGAATTGAAAACTAGATACAAATGTCCAAGATATTTATTGCGCAATATCACAGAACTTGGATTCAAAGAACCAACTCCAATCCAGAGGCAGGCTATTCCAGTACTTTTGCAGGATCGGGAATGCTTTGCTTGTGCTCCAACTGGCTCTGGAAAAACCTTCGCATTTGTGTGTCCTATGCTTATGAAACTCAAGGGGCCAGAAACAGGTGCCATTCGCGCTGTTATACTTTGTCATACGCGTGAATTATCTGCTCAAACATACCGAGAGTGCAAAAAGCTTGCCAAGGGAAAAAAATTTCGTATCAAGTTAATGACTAAACATCTTTCTAGAAATGCTGATTTTTCAAAATTTCCATGTGATATACTTATATCCACGCCACTTCGGTTACGCTTGACTATCCGGAGGAAGAAGGTTGATCTCAGCAGAGTTGAGTTTCTTGTATTGGATGAGTCCGATAAGCTGTTTGAGCCTGAACTGTTTAAGCAGATTGATTCTATTATTAAAGCATGTTCAAATCCCTCAATAATACGCTCACTATTCAGTGCCACTTTACCTGATTTTGTTGAGGATCGAGCTCGAGAACTCATGCATGATGCTGTTCGGGTAATTATTGGCAGAAAGAATATGGCTTCTGAAACAATTAAGCAAAAGTTGATTTTTACTGGAAGTGAAGAAGGAAAACTTCTAGCAATTCGTCAAAGCTTTGCAGAGAGTCTTAATCCTCCAGTATTGCTCTTTGTGCAAAGCAAGGAGCGAGCCAAGGAGCTGTATGGTGAACTTGCATTTGACAATATTAGAGTGGATGTCATCCATTCTGATCTGTCTCAAGAACAGAGGGAAAATGCTGTTGATAACTTCAGAGCTGGCAAAACATGGGTTTTGATTGCCACTGATGTAGTTGCTCGGGGCATGGATTTCAAAGGTGTGAACTGTGTGATCAATTATGATTTCCCAGATTCTGCTGCCGCATATATCCACAGGATTGGTCGATCTGGCAGAGCAGGGAGGGCAGGAGAAGCAATTACTTTGTACACGGAGGAAGACATTCCATTCTTGCGGAACGTAGCTAATTTAATGGCAGCATCAGGTTGTGAGGTTCCATCATGGCTCATGGACTTACAAAAAAAGAAGTGGAGAAAGCACCGGCCAAAAAGAGATTCAATCTCAACCAAACCAGATATATAA 1611 0.4264 MANDSFLFSGIRFDRKKFGNDIARFGKNKPIDDDTALKITDPVELKTEKTMGEQFQQRPPSSKKRKRKGTSSDAVEGFSVFRNSASAADPVDKSNDAVRADDEAIQLKKEHNRQLERDAIFRKKNNIHVAGYNVPSPLQSFDELKTRYKCPRYLLRNITELGFKEPTPIQRQAIPVLLQDRECFACAPTGSGKTFAFVCPMLMKLKGPETGAIRAVILCHTRELSAQTYRECKKLAKGKKFRIKLMTKHLSRNADFSKFPCDILISTPLRLRLTIRRKKVDLSRVEFLVLDESDKLFEPELFKQIDSIIKACSNPSIIRSLFSATLPDFVEDRARELMHDAVRVIIGRKNMASETIKQKLIFTGSEEGKLLAIRQSFAESLNPPVLLFVQSKERAKELYGELAFDNIRVDVIHSDLSQEQRENAVDNFRAGKTWVLIATDVVARGMDFKGVNCVINYDFPDSAAAYIHRIGRSGRAGRAGEAITLYTEEDIPFLRNVANLMAASGCEVPSWLMDLQKKKWRKHRPKRDSISTKPDI 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst6g01840 536 Gene3D - 344 521 IPR027417 -
Arst6g01840 536 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 355 516 IPR001650 -
Arst6g01840 536 Gene3D - 101 343 IPR027417 -
Arst6g01840 536 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 96 521 - -
Arst6g01840 536 MobiDBLite consensus disorder prediction 42 73 - -
Arst6g01840 536 Pfam Helicase conserved C-terminal domain 375 477 IPR001650 -
Arst6g01840 536 SMART ultradead3 162 359 IPR014001 -
Arst6g01840 536 CDD DEADc_DDX52 154 347 IPR044764 GO:0003724|GO:0005524|GO:0030490
Arst6g01840 536 SMART helicmild6 396 477 IPR001650 -
Arst6g01840 536 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 174 344 IPR014001 -
Arst6g01840 536 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 213 495 IPR027417 -
Arst6g01840 536 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 143 171 IPR014014 GO:0003724
Arst6g01840 536 Pfam DEAD/DEAH box helicase 167 331 IPR011545 GO:0003676|GO:0005524
Arst6g01840 536 CDD SF2_C_DEAD 356 486 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst6g01840 Arst-Chr6 21399495 21403510 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst6g01840 137 515 Eukaryotic Initiation Factors Gene Family AT3G19760 30.184 2.28e-53 184