Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst6g01723 ATGCTGGACTCAGTTCTGCTGGCGCTGTTCCTGCCGTGCCTGGGCATGAGCGCCGTCTTCATAGTGTACATCTGCCTTCTCTGGTACGCCACCGCACACCACCCCAACCTCCCTCCGCCCCCAGCCAAAACCCTCTCCGTGAAGGGCCTCTCCCCCTCCGACCTTGACAAGCTCCCCAAGGTTACCGGCAAGGACCTGCTGTCCCCTAGCGAATGTGCAGTGTGCCTCGATGACATCGCCCATGAACAAGCTGTTCGGATGGTTCCCGGTTGCAACCATGGCTTTCACCTTGAATGCGCGGATACCTGGCTTTCAGAACACCCTCTGTGTCCGGTTTGTAGAGCCAAACTGGACCTTGAGAATTTGAATTCCTCTGAAAGTGAAAAGAATCCATGCTAA 399 0.5614 MLDSVLLALFLPCLGMSAVFIVYICLLWYATAHHPNLPPPPAKTLSVKGLSPSDLDKLPKVTGKDLLSPSECAVCLDDIAHEQAVRMVPGCNHGFHLECADTWLSEHPLCPVCRAKLDLENLNSSESEKNPC 132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst6g01723 132 Pfam Ring finger domain 71 114 IPR001841 -
Arst6g01723 132 SMART ring_2 72 113 IPR001841 -
Arst6g01723 132 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 16 128 - -
Arst6g01723 132 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 41 119 IPR013083 -
Arst6g01723 132 ProSiteProfiles Zinc finger RING-type profile. 72 114 IPR001841 -
Arst6g01723 132 SUPERFAMILY RING/U-box 63 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst6g01723 Arst-Chr6 17840250 17841088 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst6g01723 1 132 C3H Transcription Factor Family AT5G42200 48.905 1.43e-40 131
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst6g01723 K19037 - gmx:100817919 202.601
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst6g01723 6 17840250 17841088 Arst6g01723 6 17840250 17841088 ECH
Arst6g01723 6 17840250 17841088 Arst8g00218 8 2817917 2819133 PCT