Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst6g01721 ATGGCCAAATTTATTCTTGTTTTGGCCACCTTCATTTTCACAGTGATGAATACTGCATATGCTTTCTCAGCTTCCGGTTGGACCAATGCCCATGCCACCTTCTATGGCGGTAGTGATGCCTCAGGAACTATGGGAGGAGCATGTGGGTATGGGAATCTGTATGCAGCAGGGTATGGGACGAGAACTGCGGCTTTGAGCACAGCCTTGTTCAATGATGGAGCCTCATGCGGAGAATGCTACAAGATCATCTGCGATTACAAAGCAGACTCAAGATGGTGCATCAAAGGAAGATCAGTCACCATAACCGCCACAAACTTTTGCCCTCCTAACTTTGCTCTTCCCAATAACAATGGAGGGTGGTGCAACCCACCTCTGAAGCACTTTGATATGGCACAACCAGCATGGGAAAAGATTGGCATCTACAGAGGAGGCATCGTCCCCGTCCTGTTCCAAAGGGTGCCATGCAAGAAGCATGGAGGGGTTAGATTCAGCATAAATGGGAGAGACTACTTTGAGTTAGTGTTGATAAGCAATGTGGGAGGTGCTGGATCCATCCAATCAGTGTCCATAAAGGGATCAAAAAGTGGGTGGATGGCTATGTCAAGAAACTGGGGTGCTAACTGGCAATCCAATGCATATTTGAATGGCCAATCTTTGTCATTCAGGGTCACTACTACTGATGGAGAAACTAAGCTTTTCAATGACATCGTTCCATCTAACTGGGGATTTGGCCAAACTTTCTCTAGCCCTCTTCAGTTCTCATAA 765 0.4667 MAKFILVLATFIFTVMNTAYAFSASGWTNAHATFYGGSDASGTMGGACGYGNLYAAGYGTRTAALSTALFNDGASCGECYKIICDYKADSRWCIKGRSVTITATNFCPPNFALPNNNGGWCNPPLKHFDMAQPAWEKIGIYRGGIVPVLFQRVPCKKHGGVRFSINGRDYFELVLISNVGGAGSIQSVSIKGSKSGWMAMSRNWGANWQSNAYLNGQSLSFRVTTTDGETKLFNDIVPSNWGFGQTFSSPLQFS 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst6g01721 254 FunFam Expansin 16 156 - -
Arst6g01721 254 Gene3D - 13 156 IPR036908 -
Arst6g01721 254 PRINTS Expansin signature 57 71 IPR002963 GO:0009664
Arst6g01721 254 PRINTS Expansin signature 86 97 IPR002963 GO:0009664
Arst6g01721 254 PRINTS Expansin signature 99 109 IPR002963 GO:0009664
Arst6g01721 254 PRINTS Expansin signature 118 135 IPR002963 GO:0009664
Arst6g01721 254 PRINTS Expansin signature 235 251 IPR002963 GO:0009664
Arst6g01721 254 PRINTS Expansin signature 206 227 IPR002963 GO:0009664
Arst6g01721 254 PRINTS Expansin signature 171 192 IPR002963 GO:0009664
Arst6g01721 254 PRINTS Expansin signature 135 148 IPR002963 GO:0009664
Arst6g01721 254 PRINTS Expansin signature 159 171 IPR002963 GO:0009664
Arst6g01721 254 Pfam Lytic transglycolase 62 149 IPR009009 -
Arst6g01721 254 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 45 160 IPR007112 -
Arst6g01721 254 Pfam Expansin C-terminal domain 161 238 IPR007117 -
Arst6g01721 254 Gene3D - 160 254 IPR036749 -
Arst6g01721 254 SUPERFAMILY PHL pollen allergen 157 249 IPR036749 -
Arst6g01721 254 FunFam Expansin 160 253 - -
Arst6g01721 254 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 170 249 IPR007117 -
Arst6g01721 254 SMART dpbb_1 62 150 IPR007112 -
Arst6g01721 254 SUPERFAMILY Barwin-like endoglucanases 26 178 IPR036908 -
Arst6g01721 254 PANTHER EXPANSIN-A15 6 249 IPR002963 GO:0009664
Arst6g01721 254 PRINTS Expansin/Lol pI family signature 44 62 IPR007118 GO:0005576
Arst6g01721 254 PRINTS Expansin/Lol pI family signature 235 249 IPR007118 GO:0005576
Arst6g01721 254 PRINTS Expansin/Lol pI family signature 66 84 IPR007118 GO:0005576
Arst6g01721 254 PRINTS Expansin/Lol pI family signature 197 211 IPR007118 GO:0005576
Arst6g01721 254 PRINTS Expansin/Lol pI family signature 26 41 IPR007118 GO:0005576
Arst6g01721 254 PRINTS Expansin/Lol pI family signature 143 159 IPR007118 GO:0005576
Arst6g01721 254 CDD DPBB_EXPA_N 26 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst6g01721 Arst-Chr6 17752274 17753560 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst6g01721 62 253 Expansin Gene Family AT1G20190 82.812 9.63e-122 343
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst6g01721 - - gmx:548040 486.493
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst6g01721 6 17752274 17753560 Arst6g01721 6 17752274 17753560 ECH
Arst6g01721 6 17752274 17753560 Arst8g00215 8 2772813 2774011 PCT