Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst6g01638 ATGAAGATCCAGTGCGACGTGTGTAGCAAGGACGAGGCATCGGTGTTCTGCACCGCCGATGAAGCCGCCCTATGCAACGGCTGCGACCACCGTGTCCACCATGCCAACAAGCTCGCATCCAAACACCAACGCTTCTCTCTTCTCCGTCTCTCCACAAAGCAAAACTTCCCTCTCTGTGATGTTTGCAAGGAGAGAAGGGCCTATGTGTTCTGCCAGCAAGATAGAGCGATTCTATGCAAAGATTGTGATATTCCAATTCATTCTGCAAATGAACACACAAAGAAGCATACTAGATTCCTTGTCACCGGTGTTAAACTCTCGGATTCTGCTAAACTCTATTCAGCCGCCACTACTCCTCCTCCTCCTCCTTTGATTGGAAGTAATAGTAGTAGTGACTCTAATTCCAAAGCTTCTCAGATTCCAAAATCTTTGGTATCTGAGCCGACTTCTTCAGCAGCATCAACGGGGCTTCCCCCAATTAAGGGAGGAAGCTTGGTTGGTGTTGCCGAAGAAGACGCTTCCACGAGTACTCGCAGCATATCTGAGTACTTGATAGAGACTATACCTGGCTGGCAAGTTGAAGACTTTCTTGATTCATCAACTGTTCCCTTTGGTTTCTCTAAGGGTGGTGATGAGATGTTTTCAGTGTTTGACGGTGAAATTGATGGAAATATGTATGCATTTTCAACAATGGAGAAGATGGGGATGTGGGTTCCTCAAGCACCGCCACCACCACCACCACCTCTTGTATATCCTTCACAATTTTGTGAGGCAAAAGATGTCACCAACAACAACATCAAAGGTAGCATCAGCAGATCAAGGTTGGGGGATGATAATTTCATTGTCCCTCAGATTAGTCTTCAATCCAACAACACCAAGAGACCAAGATATCTATGGTAG 900 0.4611 MKIQCDVCSKDEASVFCTADEAALCNGCDHRVHHANKLASKHQRFSLLRLSTKQNFPLCDVCKERRAYVFCQQDRAILCKDCDIPIHSANEHTKKHTRFLVTGVKLSDSAKLYSAATTPPPPPLIGSNSSSDSNSKASQIPKSLVSEPTSSAASTGLPPIKGGSLVGVAEEDASTSTRSISEYLIETIPGWQVEDFLDSSTVPFGFSKGGDEMFSVFDGEIDGNMYAFSTMEKMGMWVPQAPPPPPPPLVYPSQFCEAKDVTNNNIKGSISRSRLGDDNFIVPQISLQSNNTKRPRYLW 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst6g01638 299 CDD Bbox1_BBX-like 5 47 - -
Arst6g01638 299 ProSiteProfiles Zinc finger B-box type profile. 54 101 IPR000315 GO:0008270
Arst6g01638 299 MobiDBLite consensus disorder prediction 113 163 - -
Arst6g01638 299 FunFam B-box zinc finger protein 21 1 99 - -
Arst6g01638 299 MobiDBLite consensus disorder prediction 127 157 - -
Arst6g01638 299 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 290 - -
Arst6g01638 299 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Arst6g01638 299 SMART bboxneu5 54 101 IPR000315 GO:0008270
Arst6g01638 299 SMART bboxneu5 4 47 IPR000315 GO:0008270
Arst6g01638 299 CDD Bbox1_BBX-like 58 101 - -
Arst6g01638 299 Gene3D Classic Zinc Finger 1 100 - -
Arst6g01638 299 Pfam B-box zinc finger 57 94 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst6g01638 Arst-Chr6 16840705 16842638 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst6g01638 1 299 C2C2-CO-like Transcription Factor Family AT1G75540 42.773 8.43e-77 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Arst6g01638 zf-B_box 9.2e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst6g01638 - - gmx:100807827 319.316