Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst6g01585 ATGCTCATATCTCATATGGCATTGAACCACAACCACACTCACTTTGAAGAGTATCAACATCATCACACACCACAACCTTCATCAGATTCTTCTCTACTCATATTTGTTATTGTCCTGCCTCTCATACCGGCCACACTTTTCATACTCATTACCTACTTATCTTTTGTTACAAAATGCTGCTCAAATTGGCACCATGTTAACCCTCTAAGATGGATCTCCTTCCTGCGGATGCAGAATCCCAATAATCCGCATCCACAGGATGAAGATCCCTTCATAGGATTCTCTCCAAGGATGCTCAACCTTGGCTTAGATGAATCTTCCATCCAAGAAATCCCAACATTTCAGTTTACAAAAGATTTTCAAAGCATCTCTGCCTGTGTGGTTTGTCTGACAGAGTTTCAAGAAAGGGAAATGCTCAAAGTTCTTCCAAATTGCAACCATGCATTTCACTTCGATTGCATTCATATTTGGCTTCAAACCAATGCAAATTGCCCTCTCTGCAGAACAAGTATCTCCGGCAACATGCAGCTTCCAACTGACCGTATCATAGCCCCGAGTTCTTCCCCTCAGGACTCTCAGTTGCTCTCTAACATGGCAAGTGATGAAGATTTTGTGGTCATTGAAGTTGGAGCAGAACATGAAGGAATTACAACACTGCCACAGATGCAGCAACAAGTGATGAATAATGACTCAGGGGAAAGCATAGCACACAGTAGGAGTTACTCTAGCTTTGCAAGGAAGAAACCATGGAAGTGCCACCATGTTTCAATCATGGGAGATGAGTGCATTGATGTTGGAAAGAAAGATGATCAATTCTCTTCTCTTCAGCCTATTAGAAGATCCTTTTCAATGGATTCTGCAAATGATAGACAAGTTTACTTAGATGTTCAAGCCATTATTCAGCAAAATAGGCATAATCAGAATCATGCTAGTGCCAGTGAAGATTGTAATAGCAGAACCAGAAGATCATTCTTTCCGTTCCGTTATTGCCGTGGATCCAAAAGTGCAATCATTCCTCTGGAAAATGAGGTTTAA 1035 0.4126 MLISHMALNHNHTHFEEYQHHHTPQPSSDSSLLIFVIVLPLIPATLFILITYLSFVTKCCSNWHHVNPLRWISFLRMQNPNNPHPQDEDPFIGFSPRMLNLGLDESSIQEIPTFQFTKDFQSISACVVCLTEFQEREMLKVLPNCNHAFHFDCIHIWLQTNANCPLCRTSISGNMQLPTDRIIAPSSSPQDSQLLSNMASDEDFVVIEVGAEHEGITTLPQMQQQVMNNDSGESIAHSRSYSSFARKKPWKCHHVSIMGDECIDVGKKDDQFSSLQPIRRSFSMDSANDRQVYLDVQAIIQQNRHNQNHASASEDCNSRTRRSFFPFRYCRGSKSAIIPLENEV 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst6g01585 344 CDD RING-H2_EL5-like 126 168 - -
Arst6g01585 344 Pfam Ring finger domain 125 168 IPR001841 -
Arst6g01585 344 SUPERFAMILY RING/U-box 125 174 - -
Arst6g01585 344 ProSiteProfiles Zinc finger RING-type profile. 126 168 IPR001841 -
Arst6g01585 344 SMART ring_2 126 167 IPR001841 -
Arst6g01585 344 PANTHER RING-H2 FINGER PROTEIN ATL16 14 340 IPR044600 GO:0016567|GO:0016740
Arst6g01585 344 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 96 173 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst6g01585 Arst-Chr6 16036302 16037507 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst6g01585 27 305 C3H Transcription Factor Family AT1G04360 41.613 1.58e-65 210
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst6g01585 K19041 - gmx:100809883 398.667
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst6g01585 6 16036302 16037507 Arst6g01585 6 16036302 16037507 ECH