LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Arst6g01542	ATGGAAGCTTATTATGATGTTGTTGAGAATAACAAAGATATTGATGAAACTGAGAGCGATGATGATGATGATGATGATGATGAATCTCAGCATGAATTTGTTCAAGAACACTTCAAGAGAAAGAAGACTAACACAGTTAATGGGAGAAATGGGAATCCCAGTTTCAAGATTCGAATTCAAGAATCATATGTTGGGTCAAGTTGCGTGGCAATACCAGCAACGTTTGCAAGGAAGCATTTGGAGGAAGGACCGATTCGTATGAATGTGGGTAACAGAACTTGGACTGTGTGCTACAAAACTTGGAGAGGAAGTGACAGATATCGCAAACACAAATTGCAAAGTGGGTGGCTCAGATTTAGAAGAGAGAACAATTTAGAGGTTGGTGATGTGTGTGTCTTTGAGTTAATTAGCAAATTTCCTCAAACAATGACCATGAGATTGCAGAGTGGATGA	453	0.3907	MEAYYDVVENNKDIDETESDDDDDDDDESQHEFVQEHFKRKKTNTVNGRNGNPSFKIRIQESYVGSSCVAIPATFARKHLEEGPIRMNVGNRTWTVCYKTWRGSDRYRKHKLQSGWLRFRRENNLEVGDVCVFELISKFPQTMTMRLQSG	150

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Arst6g01542	150	SMART	B3_2	55	149	IPR003340	GO:0003677
	Arst6g01542	150	PANTHER	B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED	27	144	IPR044837	-
	Arst6g01542	150	MobiDBLite	consensus disorder prediction	1	32	-	-
	Arst6g01542	150	SUPERFAMILY	DNA-binding pseudobarrel domain	50	143	IPR015300	-
	Arst6g01542	150	MobiDBLite	consensus disorder prediction	13	30	-	-
	Arst6g01542	150	ProSiteProfiles	B3 DNA-binding domain profile.	54	150	IPR003340	GO:0003677
	Arst6g01542	150	CDD	B3_DNA	53	136	IPR003340	GO:0003677
	Arst6g01542	150	Gene3D	-	34	148	IPR015300	-
	Arst6g01542	150	Pfam	B3 DNA binding domain	56	143	IPR003340	GO:0003677

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Arst6g01542	Arst-Chr6	15535342	15536520	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Arst6g01542	11	136	REM Transcription Factor Family	AT1G49480	32.394	5.36e-17	72.8

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	B3	Arst6g01542		B3	1.4e-15	CL0405

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Arst6g01542	-		-	adu:107493091	291.197