Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst6g01538 ATGGAGCCTTCAATTTACCAAAGTGAGCTGAATCTGGAGGCAACAGAATTAAGGTTAGGTTTACCTGGAAGAACCAACAACAAGAGGTCTTCACCTGAAGACAGATCCAGGAGCATCAGCATCAGCATCAGCAAGAGCAGCAGCGTTGACTCTAGTGGTCCTAGTAACGCTACCGATCATGATGACGACGATGATGACCATCAAAATTCTGTCCAACCTGCAAAGGTTCAAGTAGTAGGGTGGCCACCAGTTAGATCGTTTAGGAGGAACAGTATGCAGCAACAAAAACAGAAGAAGGATGAACACAACAACAATAATGGTGATGGATCTGCGATGTACGTGAAGGTGAGCATGGCCGGTGCACCTTACTTGAGGAAGATAGATCTGAACGTTTACAATAGTTACTCTCAACTCCTCAACGCCCTCCAGAATTTGTTCAAATGCACTTTTGGGGAATATTCAGAGAGAGAAGGATACAACGGATCTGAATATGCTCCTACTTATGAAGATAAGGATGGTGATTGGATGCTCGTTGGAGACGTTCCATGGGACATGTTCACGTGTTCCTGCAAGAGGCTTAGGATTGTGAAAGGATCAGAAGCAAAGGGGTTGGCTTCTTTATGA 624 0.4487 MEPSIYQSELNLEATELRLGLPGRTNNKRSSPEDRSRSISISISKSSSVDSSGPSNATDHDDDDDDHQNSVQPAKVQVVGWPPVRSFRRNSMQQQKQKKDEHNNNNGDGSAMYVKVSMAGAPYLRKIDLNVYNSYSQLLNALQNLFKCTFGEYSEREGYNGSEYAPTYEDKDGDWMLVGDVPWDMFTCSCKRLRIVKGSEAKGLASL 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst6g01538 207 ProSiteProfiles PB1 domain profile. 111 203 IPR000270 GO:0005515
Arst6g01538 207 FunFam Auxin-responsive protein 106 207 - -
Arst6g01538 207 Gene3D - 105 207 - -
Arst6g01538 207 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 10 202 IPR003311 GO:0005634|GO:0006355
Arst6g01538 207 MobiDBLite consensus disorder prediction 17 109 - -
Arst6g01538 207 MobiDBLite consensus disorder prediction 56 70 - -
Arst6g01538 207 MobiDBLite consensus disorder prediction 36 55 - -
Arst6g01538 207 SUPERFAMILY CAD & PB1 domains 104 195 - -
Arst6g01538 207 Pfam AUX/IAA family 15 205 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst6g01538 Arst-Chr6 15306871 15308134 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst6g01538 90 206 B3 DNA Binding Superfamily AT2G46530 32.479 1.89e-11 60.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Arst6g01538 AUX_IAA 1.3e-61 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst6g01538 K14484 - gmx:100792134 263.077
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst6g01538 6 15306871 15308134 Arst6g01538 6 15306871 15308134 ECH