Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst6g01463 ATGCCGAAAGATTCATCAATCTCAAGTTCTGACGATGATTCGGTTATGTTCTTGGGGGATGTTACACCCCAAGCTAACCGTAACCGTAACCGTTACTGTCGTGTGCGTCGACGTGTGCTTGAAGGTGACAACGGAATACCTGCCAACCCTAACCCTAACGATAATCGTAGCCTAATCGTTGGAGGTCATGATTTGCGTGCCAGGAGGACCGTGACGGGTAATAACCAACCCAACCGTGACGGCAACGCTTCTGAAGAGAGTACTACAGCGGCTAAGAAGGCAGCAAGTCAAGCAAGAAAGAGTGGTGATGCAAACTTTCATGTCGGTGAGAGCAGCAAAATCCAAAAGAGGAAGACGAAGAAGAGGGGGAGGAAGAAGAAGAAGAAGGAGAACGACGATGTTTTGGATGAAATGACAAATAAGTTACTACGCGCCGGTTGGGAAATTGAGATTGATGAAAAAGATGAAGAAACTGTTTTCTATGATCTGAAGGGGAGAGCTTATACCAATTGCATCATAGCTGCATACGAGTGTTTGAAAAAGAAGTATGAAGAGCGCAAAGGAAGAGGGATCTATTATTTGAAGAATTACAAGTTTACTCCCATCAAGGATGATGATTTCGAGAAGCTTCTGTCATGGAAAGATGCTAAGAAGAGGAAAAGAAAAGATGAAGCTCATGACCCAAACCCTAATAATAACAATCGTAATAAGAGGGGAAAGAATAGCAGGAAAGACGCGAACAAGAAGAAGCAGAAACAGAAGGTGGAAACGAGCAGGAAAGGAAAAGAGAAGGTTGTTTACGATGAATCTGATTCTGATTCTGATTCTGACAGGGATCCAAATGATGACACGTGTCTTCTCTGTGCAAATGCTCGAGAAGGCACTCTGGTTTGTTGCGACGGTTGCCCTTCTTCTTTCCATCTGAGCTGCTTGAAATTACCTGGGGTTCCACCTGGTGACTGGTACTGCAGTTATTGCAGATGCAAATTTTGTGGGTTGATGACTGGTGCAGCTGATGATCCTATGTCACGCACATGTTGCTTTTGCGAGCATAAATATCATAGGTTCTGTTCACCCATGACTGGTGGTATCGTGATTGATCTTTCAGATAATCCGTTACACTTTTGCAGTAACAAATGCGAACAGTTGTTTGGGAGAGTTCAAGGGCTTCTTGGGGTCAAACATGAAATTGGAGATGGGTTTTCTTGCACTTTTTTATCTGGATTTGAGAATAATCGTCCTACCCAACTTCCAGAATGCCATGACAAGCTGGTTAGGGCACTGAAAATAATGCAAGATGGATTCAAACCAGGAATTGACCATAGAACCGGGACAAATTTGATACAAAGTGTCTTGAAGGAAAAGAGTAGGTAG 1374 0.4345 MPKDSSISSSDDDSVMFLGDVTPQANRNRNRYCRVRRRVLEGDNGIPANPNPNDNRSLIVGGHDLRARRTVTGNNQPNRDGNASEESTTAAKKAASQARKSGDANFHVGESSKIQKRKTKKRGRKKKKKENDDVLDEMTNKLLRAGWEIEIDEKDEETVFYDLKGRAYTNCIIAAYECLKKKYEERKGRGIYYLKNYKFTPIKDDDFEKLLSWKDAKKRKRKDEAHDPNPNNNNRNKRGKNSRKDANKKKQKQKVETSRKGKEKVVYDESDSDSDSDRDPNDDTCLLCANAREGTLVCCDGCPSSFHLSCLKLPGVPPGDWYCSYCRCKFCGLMTGAADDPMSRTCCFCEHKYHRFCSPMTGGIVIDLSDNPLHFCSNKCEQLFGRVQGLLGVKHEIGDGFSCTFLSGFENNRPTQLPECHDKLVRALKIMQDGFKPGIDHRTGTNLIQSVLKEKSR 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst6g01463 457 ProSitePatterns Zinc finger PHD-type signature. 285 326 IPR019786 -
Arst6g01463 457 SMART PHD_3 284 327 IPR001965 -
Arst6g01463 457 MobiDBLite consensus disorder prediction 218 281 - -
Arst6g01463 457 MobiDBLite consensus disorder prediction 69 95 - -
Arst6g01463 457 SUPERFAMILY FYVE/PHD zinc finger 263 328 IPR011011 -
Arst6g01463 457 MobiDBLite consensus disorder prediction 1 29 - -
Arst6g01463 457 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 269 381 IPR013083 -
Arst6g01463 457 PANTHER PHD FINGER PROTEIN 12 269 454 IPR042163 GO:0003714|GO:0045892
Arst6g01463 457 ProSiteProfiles Zinc finger PHD-type profile. 282 329 IPR019787 -
Arst6g01463 457 MobiDBLite consensus disorder prediction 218 233 - -
Arst6g01463 457 MobiDBLite consensus disorder prediction 69 133 - -
Arst6g01463 457 MobiDBLite consensus disorder prediction 249 271 - -
Arst6g01463 457 Pfam PHD-finger 285 329 IPR019787 -
Arst6g01463 457 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst6g01463 Arst-Chr6 14814548 14826400 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst6g01463 279 452 PHD Transcription Factor Family AT5G36670 39.785 4.67e-39 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Arst6g01463 PHD 4.5e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst6g01463 - - ahf:112696224 787.334
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst6g01463 6 14814548 14826400 Arst6g01463 6 14814548 14826400 ECH
Arst6g01464 6 14826774 14827883 Arst6g01463 6 14814548 14826400 PCT