Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst6g01404 ATGGAATCGAAAATGTCCTTTACTTCTGGAGGAACCAGTTGCCATGTTACTGGTTCAGCTGCTGAGGATGATTCAAACATGCAAGATGCTGTTGCAACTGAAGAAGGGAGTGGGAGCCAGTGGAGTTTCCTCCCAAAACCATCTCATCATAACTATGTTCAGTATCTGACTGAATCCTCAAACTATCTGCCTAAGACTGAGGATATGATTGGGAGCAATTATGCAGCTCTTGGATTTGGAAACGATGCCAATGGAACAAACATGAACTTCTTTTGTAATGATCCTGGAAAAGCTTATGCCTTTAAAACTGAAGTTCATTCTTCCAATGAAGTTGACATTGGCAAGCAAGTGGGGTATTGGAGACCTGCTGAGAGTGAAGTCCAGCAGGAAGCAATGCAATTTGAAAGTACTCAACATCATCACCCTCTCTATCCTGAGAGTCCTGCTTCATGGACACCAGAAGCAACTGGAGATAATCCTAATGTTTCACGGCTTGATCCATCAGTAATGGCTGGCACACCTAGTTTCCTTCCTAAACCAGCAAGACAGAAAGCCAGTGACCGACAACGCAGGCAACGAATTGCTGATAATCTGAAAGCGCTACACGACTTGCTTCCAAATCAAGCAGAGGGTAGTCAAGCTTATATACTGGACGACATTATCGACCATGTTAAATATTTGCAGCTTCAATTAAAGGAACTAAGTGGAAGTAGACTACAAGCTGAATCAACTGCTATACCACTGGTTTTCCATGAGCAGGGTTATGGGCATTATATTGACCAGCAGAAGCTGAATGAACCACTTGAAGAGATGATGGGGAAACTTCTTGAAGAGAATCCTGCATCTGCCAGTCAGCTGCTGGAGAACAATGGTCTTGTCCTGCTGCCTATGGAGTTGGTTCAAGACTTGCACCAATCCATGCAAATCTTCGGCAACAGCAATGCACTTGTCTGA 954 0.4392 MESKMSFTSGGTSCHVTGSAAEDDSNMQDAVATEEGSGSQWSFLPKPSHHNYVQYLTESSNYLPKTEDMIGSNYAALGFGNDANGTNMNFFCNDPGKAYAFKTEVHSSNEVDIGKQVGYWRPAESEVQQEAMQFESTQHHHPLYPESPASWTPEATGDNPNVSRLDPSVMAGTPSFLPKPARQKASDRQRRQRIADNLKALHDLLPNQAEGSQAYILDDIIDHVKYLQLQLKELSGSRLQAESTAIPLVFHEQGYGHYIDQQKLNEPLEEMMGKLLEENPASASQLLENNGLVLLPMELVQDLHQSMQIFGNSNALV 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst6g01404 317 CDD bHLH_AtbHLH_like 186 235 IPR045239 -
Arst6g01404 317 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 40 299 - -
Arst6g01404 317 MobiDBLite consensus disorder prediction 1 43 - -
Arst6g01404 317 MobiDBLite consensus disorder prediction 152 168 - -
Arst6g01404 317 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 183 242 IPR036638 GO:0046983
Arst6g01404 317 Gene3D - 180 246 IPR036638 GO:0046983
Arst6g01404 317 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 178 227 IPR011598 GO:0046983
Arst6g01404 317 Pfam Helix-loop-helix DNA-binding domain 182 228 IPR011598 GO:0046983
Arst6g01404 317 SMART finulus 184 233 IPR011598 GO:0046983
Arst6g01404 317 MobiDBLite consensus disorder prediction 127 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst6g01404 Arst-Chr6 13356638 13359742 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst6g01404 186 303 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G30980 38.655 2.10e-19 85.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Arst6g01404 HLH 4.6e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst6g01404 - - cam:101507064 313.538