Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst6g01319 ATGATGAGGAGCAGGAGAGACGTAGAAGGTGGTGAGGGCAACGACAGAGGCACCAGCGATGACGACGAGAACGGATCCACCAGGAAGAAGCTCAGGCTCTCTAAGGAACAATCTGCGTTTCTTGAAGAGAGCTTCAAAGAACACACCACCCTTAATCCTAAGCAGAAACTGGCTCTTGCGAAACAGTTAAACCTTCGTCCCCGTCAAGTTGAAGTTTGGTTTCAGAACAGAAGAGCAAGGACCAAGTTGAAGCAAACGGAGGTGGATTGCGAGTACTTGAAGAGGTGCTGTGACACCTTAACGGAAGAGAATCGGAGGTTGCAGAAGGAGCTTCAAGAGCTGAGGGCATTAAAGACTTCTCAACCCTTCTACATGCAGCTTCCGGCCACCACTCTCACAATGTGCCCTTCTTGTGAAAGGGTCGCCACCAACACCGCCGCTAATAACAATGACGCTTCTCAGATTGCTTCCGCTTTGTCTCTTAGTAACAAGCCCAGAATCTTGCCATTTCCTAATACTCAGGCCCATCCTCCTCCGGCCCAAAAGGCCCATCAATGA 558 0.5 MMRSRRDVEGGEGNDRGTSDDDENGSTRKKLRLSKEQSAFLEESFKEHTTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCDTLTEENRRLQKELQELRALKTSQPFYMQLPATTLTMCPSCERVATNTAANNNDASQIASALSLSNKPRILPFPNTQAHPPPAQKAHQ 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst6g01319 185 SMART halz 84 127 IPR003106 GO:0006355|GO:0043565
Arst6g01319 185 MobiDBLite consensus disorder prediction 166 185 - -
Arst6g01319 185 SUPERFAMILY Homeodomain-like 14 85 IPR009057 -
Arst6g01319 185 Pfam Homeobox associated leucine zipper 84 118 IPR003106 GO:0006355|GO:0043565
Arst6g01319 185 ProSiteProfiles 'Homeobox' domain profile. 24 84 IPR001356 GO:0003677
Arst6g01319 185 Pfam Homeodomain 28 82 IPR001356 GO:0003677
Arst6g01319 185 CDD homeodomain 28 85 IPR001356 GO:0003677
Arst6g01319 185 MobiDBLite consensus disorder prediction 1 33 - -
Arst6g01319 185 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 13 156 - -
Arst6g01319 185 ProSitePatterns 'Homeobox' domain signature. 59 82 IPR017970 GO:0000981|GO:0006355
Arst6g01319 185 SMART HOX_1 26 88 IPR001356 GO:0003677
Arst6g01319 185 Gene3D - 32 82 - -
Arst6g01319 185 Coils Coil 90 120 - -
Arst6g01319 185 FunFam Homeobox-leucine zipper protein 18 14 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst6g01319 Arst-Chr6 12371246 12372263 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst6g01319 2 175 Homeobox Transcription Factor Family AT4G37790 58.333 1.70e-72 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Arst6g01319 Homeodomain 9.4e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst6g01319 K09338 - gmx:100779138 264.618
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst6g01319 6 12371246 12372263 Arst6g01319 6 12371246 12372263 ECH
Arst6g01319 6 12371246 12372263 Arst6g01319 6 12371246 12372263 PCT