Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst6g01317 ATGGCGGAAGAGACTTCGGATGCTATGAACCTTGATTTGAATCTGGGTCCAGGCCCTGACCCAACCATATCAACTGATGGTCTGAACTTGGATGATTGGATTGAGGAGCCTCTTCAGAGAATCAGTGAAGCTGTGAGGCTCAGGGGGAGGCAACGGTGGAGGTGGCGGCATATCCCTATACCTCCTCCCGAAGTTCCGCTTCACCTTCCCCCGGAAGCCCCTAGGCAATTTCATATACCCCCTGAAGCAAGGAACATCTCAATGGAATTGAACCAGTTTTTGGTTAATTCTGGTCAAGGGGGTGCATTGCAGGCTGGTGAAGGCAGTGTGGCAGCTGAGGAAAGGACGGAGGTGGCACCAAAAGCTTGTGAGAACAACAATGGTGTTATGGATGATGCGGCTTTGGAGAAGAAGGATGATGATGAGAAAAGTGGTGGCACTGATGGGGACTTCTTTGATTGTAATATCTGTTTAGACCTGGCCAGGGATCCTGTTGTGACTTGCTGTGGTCATTTGTTCTGTTGGCCGTGCCTGTATCGATGGCTGCATCTGCACTCGGATGCCAAGGAGTGTCCGGTTTGTAAAGGAGAGGTGACTTTCAAGAATGTTACACCAATATATGGTCGTGGAAATAGTGTCCGCACTGCTGAGGACGATCCCACCCTGAAAGTCCCTCTGAGGCCCCCAGCCAGGCGTGTCGAGAGTCTGAGACAAACCATTCAGAGAACTGCATTTGCACTCCCTGTGGAAGAGATGATTCGTCGTCTTGGAAGCAGGATTGATCTCACTAGGGATTTACTTCACCCGCATGAACCAGACAATGCCCGTGAAACAGCAGAAAGAACTAGTTCATTGCTAAGTAGGTTTTTGACATCTCGAGGTATAAGGAGAGAGCAAAACATTGGGGCTCCTGCAGATGACGTAGTGGGTTTGTCGCATAATAATGTTAATGTTAATGTTAATGTTAATAATCATGAGGCTGGGGATAATCGCAGGGCCCAATCCCTTCTACTTAGAAGAACACAGTCACATAGGGCAACACTTTCTACCCTTTCATCAGCACTGAATTCTGCTGAAAGGCTAGTTGAGGCATATTTCCGTAGCCATCCATTAGGTAGAAACCAAGAGCAGCCTCCTCCAGTTGATGATAGAGATTCCTTTTCAAGCATCGGTGCTGTCATCAATTCAGAGAGTCAGGTGGACACTGCTGTAGAAATTGATTCCATGGTATCCTTGTCAACATCCTCTTCTAGGAGGAGAAATGATGCTTCAAGAGTGTCTGATGTGGATAGTGGAGACTCTCGCGCTCCAAGGCGCAGACGTTTGAACTGA 1332 0.482 MAEETSDAMNLDLNLGPGPDPTISTDGLNLDDWIEEPLQRISEAVRLRGRQRWRWRHIPIPPPEVPLHLPPEAPRQFHIPPEARNISMELNQFLVNSGQGGALQAGEGSVAAEERTEVAPKACENNNGVMDDAALEKKDDDEKSGGTDGDFFDCNICLDLARDPVVTCCGHLFCWPCLYRWLHLHSDAKECPVCKGEVTFKNVTPIYGRGNSVRTAEDDPTLKVPLRPPARRVESLRQTIQRTAFALPVEEMIRRLGSRIDLTRDLLHPHEPDNARETAERTSSLLSRFLTSRGIRREQNIGAPADDVVGLSHNNVNVNVNVNNHEAGDNRRAQSLLLRRTQSHRATLSTLSSALNSAERLVEAYFRSHPLGRNQEQPPPVDDRDSFSSIGAVINSESQVDTAVEIDSMVSLSTSSSRRRNDASRVSDVDSGDSRAPRRRRLN 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst6g01317 443 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 125 232 IPR013083 -
Arst6g01317 443 MobiDBLite consensus disorder prediction 124 144 - -
Arst6g01317 443 MobiDBLite consensus disorder prediction 1 20 - -
Arst6g01317 443 FunFam Zinc finger family protein 135 208 - -
Arst6g01317 443 ProSitePatterns Zinc finger RING-type signature. 169 178 IPR017907 -
Arst6g01317 443 SMART ring_2 154 194 IPR001841 -
Arst6g01317 443 MobiDBLite consensus disorder prediction 421 443 - -
Arst6g01317 443 MobiDBLite consensus disorder prediction 411 443 - -
Arst6g01317 443 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 134 324 IPR045103 GO:0005783|GO:0006511|GO:0061630
Arst6g01317 443 CDD RING-HC_AtRMA-like 152 195 - -
Arst6g01317 443 SUPERFAMILY RING/U-box 150 208 - -
Arst6g01317 443 ProSiteProfiles Zinc finger RING-type profile. 154 195 IPR001841 -
Arst6g01317 443 Pfam Zinc finger, C3HC4 type (RING finger) 154 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst6g01317 Arst-Chr6 12349803 12352089 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst6g01317 1 434 C3H Transcription Factor Family AT3G58030 53.642 1.85e-141 410
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst6g01317 K10666 - gmx:100811099 625.935
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst6g01317 6 12349803 12352089 Arst6g01317 6 12349803 12352089 ECH