Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst6g01299 ATGGATACCCGTAAGAGAGGAAGGCCTGAATTCGGATTCAACGTTAACGGAGGACTCAAGAAAAACAAGCAAGAATTGGACTCCTTATCAACTGGTGTAGGAAGCAAATCGAAGCCATGTACCAAGTTTTTCAGTACTGCTGGCTGCCCATTTGGTGAGGGCTGCCACTTCTTGCACTATGTACCTGGTGGCTACAATGCTGTTGCCCAAATGATGAATCTGGCACCTGCTGCACCTCAAGCATCTAGAAACGTTGCAGCCCCACCACCACCTGTCCCTAATGGATCTGCACAGTCTTCTGTCAAAACCCGCATATGCAACAAGTTTAATTCTGCTGAAGGCTGTAAATTTGGTGATAAATGTCATTTTGCCCATGGTGAATGGGAACTTGGCAAGCCTATTGCTCATTTTGATGATCATCGTGCCATGGGTCCCCCTCCAGTAGGTCGCATGGCTGGTCCTGGTCGAATGGAGCCGCCCCCTGGTCCTGCCACTAGCTTTGGTGCCAATGCTACAGCCAAGATCAGTGTAGAAGCTTCCCTTGCTGGAGCTATCATTGGGAAGGGTGGTGTAAACTCGAAGCAGATATGTCGCCAAACAGGAGCCAAACTTTCGATTCGAGAGCACGAATCGGATCCAAATCTCAGAAACATAGAACTCGAGGGAAGTTTCGAACAAATTAAGGAGGCGAGCAACATGGTAAAGGAATTACTTTTGACCTTGCAGATGTCTGCGCCCCCTAAATCGAACCAAGGTGCCCCGGGGTCGGCTGCTCCTGGAAGCAACTACAAGACCAAGCTGTGTGAGAATTTTTCAAAAGGATCTTGCACTTTTGGGGACAGATGTCACTTTGCACACGGTGCTGCGGAGTTGCGTAAAGGTGTATGA 888 0.4887 MDTRKRGRPEFGFNVNGGLKKNKQELDSLSTGVGSKSKPCTKFFSTAGCPFGEGCHFLHYVPGGYNAVAQMMNLAPAAPQASRNVAAPPPPVPNGSAQSSVKTRICNKFNSAEGCKFGDKCHFAHGEWELGKPIAHFDDHRAMGPPPVGRMAGPGRMEPPPGPATSFGANATAKISVEASLAGAIIGKGGVNSKQICRQTGAKLSIREHESDPNLRNIELEGSFEQIKEASNMVKELLLTLQMSAPPKSNQGAPGSAAPGSNYKTKLCENFSKGSCTFGDRCHFAHGAAELRKGV 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst6g01299 295 Gene3D K Homology domain, type 1 166 261 IPR036612 GO:0003723
Arst6g01299 295 PANTHER CCCH ZINC FINGER/TIS11-RELATED 24 146 IPR045877 GO:0003729
Arst6g01299 295 Pfam RNA-binding, Nab2-type zinc finger 39 59 - -
Arst6g01299 295 SMART kh_6 169 239 IPR004087 GO:0003676
Arst6g01299 295 FunFam Zinc finger CCCH domain-containing protein 257 293 - -
Arst6g01299 295 SUPERFAMILY CCCH zinc finger 261 292 IPR036855 GO:0046872
Arst6g01299 295 CDD KH-I_AtC3H36_like 173 238 - -
Arst6g01299 295 ProSiteProfiles Zinc finger C3H1-type profile. 34 62 IPR000571 GO:0046872
Arst6g01299 295 ProSiteProfiles Zinc finger C3H1-type profile. 262 289 IPR000571 GO:0046872
Arst6g01299 295 SMART c3hfinal6 100 127 IPR000571 GO:0046872
Arst6g01299 295 SMART c3hfinal6 262 288 IPR000571 GO:0046872
Arst6g01299 295 SMART c3hfinal6 34 61 IPR000571 GO:0046872
Arst6g01299 295 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 160 242 IPR036612 GO:0003723
Arst6g01299 295 FunFam Zinc finger CCCH domain-containing protein 95 132 - -
Arst6g01299 295 ProSiteProfiles Zinc finger C3H1-type profile. 100 128 IPR000571 GO:0046872
Arst6g01299 295 ProSiteProfiles Type-1 KH domain profile. 170 234 - -
Arst6g01299 295 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 102 127 IPR000571 GO:0046872
Arst6g01299 295 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 263 287 IPR000571 GO:0046872
Arst6g01299 295 SUPERFAMILY CCCH zinc finger 100 131 IPR036855 GO:0046872
Arst6g01299 295 SUPERFAMILY CCCH zinc finger 35 60 IPR036855 GO:0046872
Arst6g01299 295 Gene3D - 262 293 - -
Arst6g01299 295 Gene3D - 95 132 - -
Arst6g01299 295 Pfam KH domain 173 236 IPR004088 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst6g01299 Arst-Chr6 12233152 12236624 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Arst6g01299 KH_1 3.5e-12 CL0007
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst6g01299 - - gmx:100803981 518.079
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst6g01299 6 12233152 12236624 Arst6g01299 6 12233152 12236624 PCT