Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst6g01285 ATGGAAGATTTGAAGAAGAGAAAGCTGGAGGAGGCTGCAAATGGTGAGTGTCCCTCAAAGGAAGAGCTTCGCGTCCTCATTGAACCCCTTCCTAAAGCTCAGCTCATCGACCTTCTCACTAAATTAGGGTCTCAATATCCTTCAATTGCACAAGAAATAAAAAGTATTGCGAGTGTTGATCCTGTTCATCGAAAGCTTTTTGTTCGTGGCTTGGCTTGGAATACCACGTCAGAAACCTTGCGTGTTGCATTTCAAGAGCATGGAGAAATTGAGGAAGGGGCTGTCATCCATGATAAGAATACAGGAAAATCTCGTGGCTATGGTTTTATCACTTATAAGTATATGGAATCAACTCAGCAAGCATTGAGAGCACCTAGCAAGTTAATTGATGGAAGATTGGCTGTTTGTAATCTGGCTTGTGAAGGACTTAGTGGATCAAGTAGTGCTCCTGATCTTGCCCAGAGGAAGCTTTATATTGGTAGCTTATCGCCGGAAGTCACGAGTGAAATGCTGCTTAACTATTTTTCAAGGCATGGTGAAATAGAGGAAGGTTCAGTTGCATATGACAAGGATACAAATGAATCACGTGGTTTTGGCTTCGTAACATACAAGACATCAGAAGCTGCAAAGAAGGCCATCGATGACCAAGAAAAGACTCTTGGGGGGAGGAATATAATGGTAAAATATGCTGATTCGCACAAGAGTAAAACTAGCCAGGCATCATTTTCTCCAGGAGTGGTTCCAATGGCAGCCTTACCTATGGCCTCAGGATATGTGCAACCTGGAAAAACTCATATTGGTACTACCCTGCCAGATGGTTACACTTACCCACAAACTATAGCATCATACTCTTCTTATCAAAGCCCTACCACTGTACCTTCTCCTTATGCAGTTCAAGGACATGGTCCTTATCCAACTTCTTTTACAAAGAAAGATCAACTTGGTATCCCAAACCAACCTATGGCAATGAACAACTACCCTTATTACTATCCCAAGCAATGA 1002 0.4242 MEDLKKRKLEEAANGECPSKEELRVLIEPLPKAQLIDLLTKLGSQYPSIAQEIKSIASVDPVHRKLFVRGLAWNTTSETLRVAFQEHGEIEEGAVIHDKNTGKSRGYGFITYKYMESTQQALRAPSKLIDGRLAVCNLACEGLSGSSSAPDLAQRKLYIGSLSPEVTSEMLLNYFSRHGEIEEGSVAYDKDTNESRGFGFVTYKTSEAAKKAIDDQEKTLGGRNIMVKYADSHKSKTSQASFSPGVVPMAALPMASGYVQPGKTHIGTTLPDGYTYPQTIASYSSYQSPTTVPSPYAVQGHGPYPTSFTKKDQLGIPNQPMAMNNYPYYYPKQ 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst6g01285 333 Gene3D - 142 244 IPR012677 -
Arst6g01285 333 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 66 132 IPR000504 GO:0003723
Arst6g01285 333 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 157 225 IPR000504 GO:0003723
Arst6g01285 333 FunFam UBP1-associated protein 2C 142 240 - -
Arst6g01285 333 SUPERFAMILY RNA-binding domain, RBD 51 141 IPR035979 GO:0003676
Arst6g01285 333 CDD RRM2_NsCP33_like 156 230 - -
Arst6g01285 333 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 64 164 IPR000504 GO:0003723
Arst6g01285 333 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 56 132 - -
Arst6g01285 333 SUPERFAMILY RNA-binding domain, RBD 151 243 IPR035979 GO:0003676
Arst6g01285 333 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 155 232 IPR000504 GO:0003723
Arst6g01285 333 Gene3D - 56 141 IPR012677 -
Arst6g01285 333 SMART rrm1_1 65 137 IPR000504 GO:0003723
Arst6g01285 333 SMART rrm1_1 156 228 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst6g01285 Arst-Chr6 12084015 12086901 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst6g01285 147 262 C2H2 Transcription Factor Family AT2G19380 33.051 3.17e-13 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst6g01285 K12741 - gmx:100776344 499.975
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst6g01285 6 12084015 12086901 Arst6g01285 6 12084015 12086901 ECH