Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst6g01278 ATGGCTTCGGGGGGAAGAACTGCCACCAATAACCATAAGAACCAACCACCTTCCTCCACAGTTGAGTCTCTAAATGGCTTGAAATTCGGCCAAAAAATATATTTTGAGGATTTGGGTCTCTCCACACCGTCAACCACTTATTCAACTTCATCCTCTTCTTCTGCTGTTGGTGTTCCCAAGAAGGGAGTTTGTGCCATGCACTCCAAATCCCCCACTGTCACTGTTTCTGGTCTCCAACAAAGGTTTTGCCAACAGTGTAGCAGATTTCATCAGCTTCCTGAATTTGATCAAGGGAAACGAAGTTGCCGCAGGCGGCTTGCCGGCCATAACGAACGTCGGAGAAAGCCCCCACCATCCAGCAACTTCTTAACCTCTCGTTATGCAAGACTTTCTTCGTCACTTTTCGATGATAGTGGCAAAGGTGGAAGCTTCCTGATGGAATTCGCTTCATACCCGAAGCTGGGTCTTAGAAACACAGTTCCAAATCCCAGATCATCTCAACCAAGCTGGCAGGGCTATTCAGAGACATCATCTGACCTTTTCTTGCAAGGTTCAGTGGGTGGGACAAGCATCCCCAATCTCAGACACCCTCCTCCTTTGAGCGAAAGTTATGCCGGCGTAGCAGACTCAAGCTGTGCTCTCTCTCTTCTGTCAAGCCAAACATGGGGATCTAGTAACATGGCACCAAGTCTCGGGTTGAATAACATGTTGAATTTCAGTGGTGCACCTGTGACACAACTTGCTGCATCATCCCATGGTGAATCCATCCATCAAGTTCCGAATCCCTGGTGGTGTTCAAACAAGGTTGTCCCTGATCTAGGCCTCGGTCAATTCTCGCAGCTTCCTAATAGCCAAGTTCCCGGCGAGTTCGATGCACTGGAACCAGGTAGGAGGCATCATGTGAATCTAGAGTAG 915 0.4852 MASGGRTATNNHKNQPPSSTVESLNGLKFGQKIYFEDLGLSTPSTTYSTSSSSSAVGVPKKGXVCAMHSKSPTVTVSGLQQRFCQQCSRFHQLPEFDQGKRSCRRRLAGHNERRRKPPPSSNFLTSRYARLSSSLFDDSGKGGSFLMEFASYPKLGLRNTVPNPRSSQPSWQGYSETSSDLFLQGSVGGTSIPNLRHPPPLSESYAGVADSSCALSLLSSQTWGSSNMAPSLGLNNMLNFSGAPVTQLAASSHGESIHQVPNPWWCSNKVVPDLGLGQFSQLPNSQVPGEFDALEPGRRHHVNLE 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst6g01278 305 MobiDBLite consensus disorder prediction 102 124 - -
Arst6g01278 305 ProSiteProfiles Zinc finger SBP-type profile. 37 117 IPR004333 GO:0003677
Arst6g01278 305 SUPERFAMILY SBT domain 60 121 IPR036893 GO:0003677|GO:0005634
Arst6g01278 305 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 64 286 IPR044817 GO:0003677
Arst6g01278 305 Pfam SBP domain 60 116 IPR004333 GO:0003677
Arst6g01278 305 MobiDBLite consensus disorder prediction 1 23 - -
Arst6g01278 305 Gene3D - 48 104 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst6g01278 Arst-Chr6 12067122 12069851 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst6g01278 27 305 SBP-box Gene Family AT2G42200 38.484 2.35e-48 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Arst6g01278 SBP 3.9e-24 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst6g01278 6 12067122 12069851 Arst6g01278 6 12067122 12069851 ECH
Arst6g01278 6 12067122 12069851 Arst6g01278 6 12067122 12069851 PCT