Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst6g01252 ATGGATTCCAGTTCCCGTTATCACCAACAGCAGCTAAACTCATCGTCGTCATCAGCATCAGGATTGCTTCGATTTCGCTCTGCTCCTCCTTCAGTCCTCGAACAGTTACAGGTTGTTGAAGGTTCTTGTTCATCTGAACAGGAGAGGTCGTCGTCGTCGTCGTTCTTGAGATTCTTCAGTTCCAACAAAAATAAGCCTTCTTCAACAACAAAACCGCCATCACTTTCTTTGATGAATTCGAATCATCGCTTCACCAGACTGCACAACTCGTCAACTGCACCTTCCGCTTCCACTTCCTCTGGAACGGATCTACCAAGGCAGAGCACTTTTCCAGCTTCGCATTTCTCCTTCCACGATAATAACGGGTATGATACTAATGCAAATACTATGACGAAAGGTGTTGGAAACTACAGCGGCAGTGATGAACTTAGTCTATCCACAATGAACAGATTCAATAACCAAATTAGCTTCTCATCATCAAGAAGCCCTTCTTCTTCAGCAACAGCAACTAATAGTAACCGTAATGGTGGATTATTCTTCCCTAATTATGGTTCTTGGAATGAGACATCATACAAGAGGGACGACCGAAATAGGATTCATAAGTTAATTTTTGATGCTAATCAGAATGAAGAGTTTGGGAATAATAAAGTAGTTGATACACTATCGCATCAACTAAGTTTTCCAAAAGCGGAACCGGAGATGTTTGCAATGGAGAATATGATTCACTTCCCATTATCAGATTCTGTTCCATGTAAAATTAGAGCCAAAAGAGGATGTGCTACTCATCCCAGAAGCATTGCCGAAAGGGTGAGAAGGACTCGGATCAGTGAACGAATGAAAAAATTACAAGAGCTTGTTCCGAACATGGACAAGCAAGCCAGCACAGCAGACATGTTGGACATGGCTGTAGGATACATAAAAGATCTTCAGAAACAATTTAAGAATCTAAGTGACAGACGGGCTAAATGCAAGTGTATAAGGATGCAGAAATCAGATTCTTCAAAAAAATTTTGA 1014 0.4122 MDSSSRYHQQQLNSSSSSASGLLRFRSAPPSVLEQLQVVEGSCSSEQERSSSSSFLRFFSSNKNKPSSTTKPPSLSLMNSNHRFTRLHNSSTAPSASTSSGTDLPRQSTFPASHFSFHDNNGYDTNANTMTKGVGNYSGSDELSLSTMNRFNNQISFSSSRSPSSSATATNSNRNGGLFFPNYGSWNETSYKRDDRNRIHKLIFDANQNEEFGNNKVVDTLSHQLSFPKAEPEMFAMENMIHFPLSDSVPCKIRAKRGCATHPRSIAERVRRTRISERMKKLQELVPNMDKQASTADMLDMAVGYIKDLQKQFKNLSDRRAKCKCIRMQKSDSSKKF 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst6g01252 337 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 259 309 IPR011598 GO:0046983
Arst6g01252 337 Pfam Helix-loop-helix DNA-binding domain 264 310 IPR011598 GO:0046983
Arst6g01252 337 Gene3D - 260 332 IPR036638 GO:0046983
Arst6g01252 337 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 28 333 - -
Arst6g01252 337 MobiDBLite consensus disorder prediction 54 117 - -
Arst6g01252 337 FunFam Transcription factor bHLH130 family 260 329 - -
Arst6g01252 337 SMART finulus 265 315 IPR011598 GO:0046983
Arst6g01252 337 MobiDBLite consensus disorder prediction 1 23 - -
Arst6g01252 337 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 262 325 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst6g01252 Arst-Chr6 11769574 11773469 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst6g01252 18 314 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G42280 40.115 6.98e-49 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Arst6g01252 HLH 3.7e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst6g01252 - - ahf:112758816 564.688
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst6g01252 6 11769574 11773469 Arst6g01252 6 11769574 11773469 ECH
Arst6g01252 6 11769574 11773469 Arst9g04055 9 115660867 115663905 ECH
Arst6g01253 6 11769574 11772140 Arst6g01252 6 11769574 11773469 PCT