Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst6g01225 ATGGAGACAGATAACAACAGTGAGTCAAAGTCAAAGAAGATGGAAGACTATGAGGTGATAGAGCAAATTGGAAGAGGAGCATTTGGTTCTGCTTTTCTGGTTCTTCACAAGTCTGAGAAGAAGAGATATGTGCTGAAAAAGATTCGCTTGGCAAAGCAAACTGAGAAGTTCAAAATTACAGCACACCAAGAGATGAATCTGATTGCAAAACTAAATAACCCATATATTGTGGAATACAAAGATGCTTGGGTGGAGAAGGAGGACCATATATGCATTGTTACTGGCTACTGTGAAGGAGGTGACATGGCTGAGTACATAAAGAAATCGCGCGGATCATTTTTCCCTGAGGAGAAGGTCTGCAAATGGCTCACTCAATTGTTGATAGCTGTGGACTACTTGCACTCTAATCGTGTGATCCATAGAGATCTTAAGTGTTCCAACATATTCCTCACAAAAGACAATAACATTCGGCTTGGTGACTTTGGTCTTGCGAAACGGCTTAATCCAGAAGATCTTGCTTCCTCGATTGTTGGAACTCCAAATTATATGTGCCCTGAGCTTCTAGCTGATATACCTTATGGTTATAAATCTGACATGTGGTCGCTCGGTTGCTGCATGTTTGAGATTGCTGGACACCAACCAGCCTTTCGTGCTCCGGACATGGCTGGACTTATTAATAAAATTAACAGATCCTCCATTTCTCCATTGCCAATTATTTATTCTTCCACACTGAAACAACTTATTAAGAGCATGCTGAGGAAAAACCCAGAACATAGACCAACAGCTGCCGAATTGTTACGCCATCCTCTTTTACAGCCTTATGTTCTCCGCTGTCAAAACGCATCATCCAATTTTCTTCCAGTATACCCCATAGTTAACTCAAAGGATAAAACAAAAAGATCTAAAAAATCTAGTGGTGGCAAGGACCAGAGGGACAAAGACACAACATCACCAAATTATTTGGAAAGGATTCATCCGATTGAGGGAAATGGACACTTACAGCCGAGGAATCTTCCAAGTGAGGGAGAGCTAACAGCTTCAACCAGTGCAGAAGACAACCTTGAGAACCGTATGGTTGATCTTACAAGCTATATAGTGGAATCTTCTACTAGTATTAGTGGCTCAAAAGATGGATCAACAACATCAGAATCAACTATTTGTAGTGTGTGTAGGGACCCTGACTTTAAAACTAGGCCTGCAAAGGAAACTGCAAATATTGAAATCACTTCAAAGAGTACACAAGATTCTGTGCATCAAGATCATGAATTTGCTGCTGAACTTCTTCAAAACTTAGAAGGGATTGACATAAATGCTGTTACAACACTAGTTGAAGATGCTTTTTCGGATGACGGTGCTAACAATGCTGAAGCAGATAGAGAAGATGCCAAACTTGAAGACCCGAGGAAATCGGCTTCCAGTGCTGAAGCACAGAGAGAAGATGCCAAACTAGTGGACTCCATGAAATCAACAACTTCCAGTGCAGGCACCAGCAGCACTGGTAAAGATAAGTCCATTGATGAGGAAAGGTTGTTGCTGATTCTGCATCCTGTTAAGGTTGAATGTGGCACCAAATCCGGAACCAGCTTGAAGGAAATCGAAAATCCTGATGCATCGAAGGAAGGCTCACAATTGAACTACTTGTCATCTGAAAGTAATGATGCTCCTCCAGTCAAGGATGAATGCTCCATGCATAAAGATGAAAATGCCAATGCAGTTGATCAGACACTGAATGGCATTTCGTTAAGCACTTCGACAATCAGCGATGAAACAACGAAGTCAGAGTTGGATAGTCCTTCCCAGCAAAGGGCTGAGGCTCTTGAATCTCTGCTTGAGTTATGTGCTCAGCTACTCAAGCAAGATAAGCTCGAAGAGCTTGCGGCTGTGCTAAGACCGTTCGGAAAAGAAGCTGTCTCATCCAGAGAAACAGCAATATGGCTGACCAAGAGCCTTATATCAGCACAGAAGTTTAATCCTGAAAGCTAG 1983 0.4211 METDNNSESKSKKMEDYEVIEQIGRGAFGSAFLVLHKSEKKRYVLKKIRLAKQTEKFKITAHQEMNLIAKLNNPYIVEYKDAWVEKEDHICIVTGYCEGGDMAEYIKKSRGSFFPEEKVCKWLTQLLIAVDYLHSNRVIHRDLKCSNIFLTKDNNIRLGDFGLAKRLNPEDLASSIVGTPNYMCPELLADIPYGYKSDMWSLGCCMFEIAGHQPAFRAPDMAGLINKINRSSISPLPIIYSSTLKQLIKSMLRKNPEHRPTAAELLRHPLLQPYVLRCQNASSNFLPVYPIVNSKDKTKRSKKSSGGKDQRDKDTTSPNYLERIHPIEGNGHLQPRNLPSEGELTASTSAEDNLENRMVDLTSYIVESSTSISGSKDGSTTSESTICSVCRDPDFKTRPAKETANIEITSKSTQDSVHQDHEFAAELLQNLEGIDINAVTTLVEDAFSDDGANNAEADREDAKLEDPRKSASSAEAQREDAKLVDSMKSTTSSAGTSSTGKDKSIDEERLLLILHPVKVECGTKSGTSLKEIENPDASKEGSQLNYLSSESNDAPPVKDECSMHKDENANAVDQTLNGISLSTSTISDETTKSELDSPSQQRAEALESLLELCAQLLKQDKLEELAAVLRPFGKEAVSSRETAIWLTKSLISAQKFNPES 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst6g01225 660 MobiDBLite consensus disorder prediction 296 355 - -
Arst6g01225 660 SMART serkin_6 17 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Arst6g01225 660 FunFam Serine/threonine-protein kinase Nek6 1 96 - -
Arst6g01225 660 Gene3D Transferase(Phosphotransferase) domain 1 99 325 - -
Arst6g01225 660 Pfam Protein kinase domain 17 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Arst6g01225 660 ProSitePatterns Protein kinases ATP-binding region signature. 23 46 IPR017441 GO:0005524
Arst6g01225 660 MobiDBLite consensus disorder prediction 581 600 - -
Arst6g01225 660 MobiDBLite consensus disorder prediction 340 355 - -
Arst6g01225 660 Gene3D Phosphorylase Kinase; domain 1 1 96 - -
Arst6g01225 660 ProSiteProfiles Protein kinase domain profile. 17 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Arst6g01225 660 SUPERFAMILY Protein kinase-like (PK-like) 14 305 IPR011009 -
Arst6g01225 660 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 14 610 - -
Arst6g01225 660 MobiDBLite consensus disorder prediction 486 500 - -
Arst6g01225 660 MobiDBLite consensus disorder prediction 452 485 - -
Arst6g01225 660 FunFam serine/threonine-protein kinase Nek6 isoform X2 97 285 - -
Arst6g01225 660 MobiDBLite consensus disorder prediction 296 319 - -
Arst6g01225 660 MobiDBLite consensus disorder prediction 526 562 - -
Arst6g01225 660 MobiDBLite consensus disorder prediction 527 552 - -
Arst6g01225 660 MobiDBLite consensus disorder prediction 450 503 - -
Arst6g01225 660 ProSitePatterns Serine/Threonine protein kinases active-site signature. 138 150 IPR008271 GO:0004672|GO:0006468
Arst6g01225 660 CDD STKc_Nek 16 271 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst6g01225 Arst-Chr6 11460799 11466063 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst6g01225 10 272 MAP Kinase Kinase Kinase AT3G13530 32.075 1.74e-37 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Arst6g01225 Pkinase 8.7e-68 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst6g01225 6 11460799 11466063 Arst6g01225 6 11460799 11466063 ECH
Arst6g01225 6 11460799 11466063 Arst6g01225 6 11460799 11466063 PCT