Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst6g01224 ATGGCTCACAACAACTCTTCTTACTCCAATCTCTTCTTCTCCTCCTCCTCTTCTTCTTCTTCCTCTTCTTCCTTCTCCTCTCCTGCAACACCAGCACCACCGCCCTTTTTCCAATTCAACCACCACCGTTATTTCCCTTATTATTACCACCACCATCACACTACTACTGCTTCTGCACCTTTCTCTTATTCATCCTCATCTACTACTTCACCTCCTTCCCCTCCTCTCAGGGAAGAGCTTCCGCTTCTCACTCTCAGTCCCGCAAGGCCCGACACCAACCACCACCCTTCTTGCAGCACCACTTCCATGGATTTCGACGAAGAAGACGACGCCGACGCTGACGACGCTGATGCTGATGCTACTGATGCTGCTGATGCTACTACTGTCACGGTTGCACTGCACATAGGGCTTCCGAGCCCTAGCGCTGCGGAGATGGCATCCGTGCTCTCCGAGAAGGAGCACGGCGGAGGTGAGGATTCCGGAGGCGGTGGTTCGACGGGGAACAAGGTGAACAAGGGACAGTACTGGATCCCAACCCCATCTCAGATTCTGATTGGTCCTACCCAGTTTTCTTGCCCTGTTTGCTGCAAAACCTTCAACAGATACAACAACATGCAGATGCATATGTGGGGGCATGGATCGCAATATAGAAAAGGACCAGAATCTCTAAGGGGAACTCAACCAACAGGGATGTTAAGGTTACCATGCTATTGTTGTGCACCAGGATGTAGGAACAACATTGACCACCCAAGATCAAAGCCATTGAAGGACTTTAGAACACTGCAAACACATTACAAGAGGAAGCATGGGATTAAGCCTTTCATGTGCAGGAAATGTGGCAAGGCCTTTGCTGTTAGGGGTGATTGGAGAACCCATGAGAAGAACTGTGGCAAGCTTTGGTATTGTATTTGTGGTTCTGATTTCAAGCACAAGAGATCCCTTAAGGATCACATTAAAGCTTTTGGCTCTGGCCATGCAGCTTATGGCATTGATGGTTTTGAAGAAGATGATGATCCTGCTTCTGAAGTAGAGCAAGATCATGAATCCACCCAATAA 1056 0.4877 MAHNNSSYSNLFFSSSSSSSSSSSFSSPATPAPPPFFQFNHHRYFPYYYHHHHTTTASAPFSYSSSSTTSPPSPPLREELPLLTLSPARPDTNHHPSCSTTSMDFDEEDDADADDADADATDAADATTVTVALHIGLPSPSAAEMASVLSEKEHGGGEDSGGGGSTGNKVNKGQYWIPTPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRSKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGSGHAAYGIDGFEEDDDPASEVEQDHESTQ 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst6g01224 351 MobiDBLite consensus disorder prediction 59 121 - -
Arst6g01224 351 MobiDBLite consensus disorder prediction 1 27 - -
Arst6g01224 351 SUPERFAMILY beta-beta-alpha zinc fingers 255 294 IPR036236 -
Arst6g01224 351 Gene3D Classic Zinc Finger 252 327 - -
Arst6g01224 351 MobiDBLite consensus disorder prediction 332 351 - -
Arst6g01224 351 ProSitePatterns Zinc finger C2H2 type domain signature. 192 212 IPR013087 -
Arst6g01224 351 FunFam Zinc finger protein WIP2 243 325 - -
Arst6g01224 351 Gene3D Classic Zinc Finger 189 212 - -
Arst6g01224 351 PANTHER ZINC FINGER PROTEIN WIP2 45 348 IPR043584 GO:0003700|GO:0010468
Arst6g01224 351 SMART c2h2final6 190 212 IPR013087 -
Arst6g01224 351 SMART c2h2final6 274 294 IPR013087 -
Arst6g01224 351 MobiDBLite consensus disorder prediction 143 171 - -
Arst6g01224 351 MobiDBLite consensus disorder prediction 59 73 - -
Arst6g01224 351 MobiDBLite consensus disorder prediction 103 121 - -
Arst6g01224 351 ProSiteProfiles Zinc finger C2H2 type domain profile. 274 294 IPR013087 -
Arst6g01224 351 SUPERFAMILY beta-beta-alpha zinc fingers 186 212 IPR036236 -
Arst6g01224 351 ProSiteProfiles Zinc finger C2H2 type domain profile. 190 217 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst6g01224 Arst-Chr6 11411573 11413451 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst6g01224 76 351 C2H2 Transcription Factor Family AT3G57670 68.750 1.83e-143 409
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Arst6g01224 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst6g01224 - - vvi:100255592 447.973
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst6g01224 6 11411573 11413451 Arst6g01224 6 11411573 11413451 ECH
Arst6g01224 6 11411573 11413451 Arst6g01224 6 11411573 11413451 PCT