Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst6g01215 ATGAATCACTTGACTATTGAGACTGAAGATTCTTTTGCTGGCTTGCTTGAGCTTGCAGCCAATAACGATGTGGATGGTTTCAAACGAATGATTGAGTGTGATCCTTCCTCTGTGGATGAGGTTGGGCTGTGGTATGGCCGTCGGAAGGGATCAAAACAGATGGTCAATGAACAAAGAACACCTTTGATGGTTGCTGCTATCTATGGTAGCATCGATGTTATGAGAATGATTCTTTCACTCTCTGAAGCTGATATCAACCGGCCTTGTGGTGCTGACAAGAGCACTGCCCTTCATTGTGCAGCATCCGGTGGTTCCGAAAATGCTGTGGATGCTGTGAAGCTGCTTCTTGCGGCAGGTGCTGATCCAAATTCTGTGGATGCCAATGGGCATCGTCCCATAGATGTTATTGTTTCTCCTCCTAAGCTTGAGTCTGTCAAAAACAGTCTTGAAGAACTTCTTCAAACTGATGATTCTATTACTGGGTGTAATTTGAGGGTAATCACAACCACATTTAATTCATATTCTCCACCTTTGTCAACTTCACCTGAGAATGGATCCCCTTCTGCACCAGATTTCCAATTGAAGTTAAAGTCAAGTGATGTCCCTGCATCGTCTGTGTCTGAGAAGAAAGAATATCCGGTTGATCCATCCCTTCCGGACATTAAGAACAGTATTTATTCAACCGACGAGTTCCGAATGTATTCATTCAAGGTTCGACCTTGTTCTCGTGCTTATTCCCATGATTGGACTGAATGCCCTTTTGTGCATCCAGGGGAGAATGCTCGGAGAAGGGACCCAAGGAAGTACCATTATAGTTGTGTCCCTTGTCCTGATTTTCGAAAGGGTGCTTGCCGGCGGGGAGATATGTGTGAATATGCTCATGGAGTTTTTGAGTGCTGGCTTCATCCAGCACAATACAGGACTCGTCTTTGCAAGGATGGGACAAGTTGTTCCAGAAGAGTCTGCTTCTTTGCCCACACTGCTGAAGAGCTTCGGCCCTTATATGTTTCAACTGGTTCTGCGGTTCCCTCTCCTCGTTCAAGCACGTCTTCAGCCATGGACTTCGCTGCGGCCATGAGCATGTTGCCTGGCTCTCCTTCTTCGATGTCTGTCATGTCTCCTTCACCATTCACTCCGCCAATGTCACCTTCTGCAAATGGCATGTCGCACTCCTCTGTTGCATGGCCGCAGCCAAATGTTCCAGCCTTGCATCTTCCAGGAAGTAACCTTCAGTCTAGTCGGCTGAGATCTTCTCTCAATGCTAGAGATATCCCTATGGATGACTTTGACATGTTGTCTGATTATGATCAGCAGCAGCAGCTCATGAATGAGTTGTCTTGCCTCTCTCCACAGCCTATGAATTCTAATTCACTAAATCGCTCTGGTCGCATGAAGCCGCTGACTCCGTCAAACCTTGATGATCTTTTTTCTGCTGAGAGTTCTTCACCTCGTTTTGCCGATCCAGCTCTGACATCAACTGTCTTTTCTCCAACTCACAAATCAGCCGTCTTCAATCAATTTCAGCAGCAGCAAAGCTTGTTGTCACCTATTAATACAAATTTCTCGTCTAAAAATGTTGATCATCATTTATTGCAGGCCTCTTTTGGGGTTCAGGCATCAGGAAGAATGTCTCCGCGAACTGTGGAACCTATTTCTCCAATGAGCTCTAGGCTTTCGATGCTAGCTCAACGCGAGAAGCAGCAACAGTTTCGGAGCCTTAGCTCCCGGGAACTTGGCTCCAACTCTGCTACTGCAGCAGCAGCTGCTTCCGTCAATTCTTGGTCAAAATGGGGATCCCCCAACGGTAAGGTGGATTGGGCAGTAGGTGCTGATGAATTAGGTGGTGGTGGTAAGCTGCGTAGATCTTCGTCATTTGAGCTCGGCAACAATGGGGAGGAGCCTGATTTGTCATGGGTGCAGTCACTTGTCAAGGAATCTCCAACTGAAATCAAAGAGAAGTTGGCCACTAATGTCTCCGGTGCTGCAGCTGCTGGATCCTTGAATGAAGGATCAAATATGGGCACACAAATGGAGTCTGTTGATCATGCCGTATTGGGAGCATGGCTCGAACAGATGCAGCTTGACCATCTTGTGGCACAGCAAAATTAA 2109 0.4685 MNHLTIETEDSFAGLLELAANNDVDGFKRMIECDPSSVDEVGLWYGRRKGSKQMVNEQRTPLMVAAIYGSIDVMRMILSLSEADINRPCGADKSTALHCAASGGSENAVDAVKLLLAAGADPNSVDANGHRPIDVIVSPPKLESVKNSLEELLQTDDSITGCNLRVITTTFNSYSPPLSTSPENGSPSAPDFQLKLKSSDVPASSVSEKKEYPVDPSLPDIKNSIYSTDEFRMYSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKYHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTSCSRRVCFFAHTAEELRPLYVSTGSAVPSPRSSTSSAMDFAAAMSMLPGSPSSMSVMSPSPFTPPMSPSANGMSHSSVAWPQPNVPALHLPGSNLQSSRLRSSLNARDIPMDDFDMLSDYDQQQQLMNELSCLSPQPMNSNSLNRSGRMKPLTPSNLDDLFSAESSSPRFADPALTSTVFSPTHKSAVFNQFQQQQSLLSPINTNFSSKNVDHHLLQASFGVQASGRMSPRTVEPISPMSSRLSMLAQREKQQQFRSLSSRELGSNSATAAAAASVNSWSKWGSPNGKVDWAVGADELGGGGKLRRSSSFELGNNGEEPDLSWVQSLVKESPTEIKEKLATNVSGAAAAGSLNEGSNMGTQMESVDHAVLGAWLEQMQLDHLVAQQN 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst6g01215 702 Gene3D - 272 333 - -
Arst6g01215 702 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 275 295 IPR000571 GO:0046872
Arst6g01215 702 SMART c3hfinal6 270 296 IPR000571 GO:0046872
Arst6g01215 702 SMART c3hfinal6 305 328 IPR000571 GO:0046872
Arst6g01215 702 MobiDBLite consensus disorder prediction 175 205 - -
Arst6g01215 702 ProSiteProfiles Zinc finger C3H1-type profile. 275 297 IPR000571 GO:0046872
Arst6g01215 702 MobiDBLite consensus disorder prediction 175 212 - -
Arst6g01215 702 ProSiteProfiles Ankyrin repeat region circular profile. 92 126 - -
Arst6g01215 702 PANTHER UNKEMPT FAMILY MEMBER 17 646 IPR045234 -
Arst6g01215 702 FunFam Zinc finger CCCH domain-containing protein 66 228 296 - -
Arst6g01215 702 Pfam Ankyrin repeats (3 copies) 19 126 IPR002110 GO:0005515
Arst6g01215 702 ProSiteProfiles Ankyrin repeat profile. 92 127 IPR002110 GO:0005515
Arst6g01215 702 SUPERFAMILY Ankyrin repeat 18 138 IPR036770 -
Arst6g01215 702 Gene3D - 10 154 IPR036770 -
Arst6g01215 702 SMART ANK_2a 92 124 IPR002110 GO:0005515
Arst6g01215 702 SMART ANK_2a 57 87 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst6g01215 Arst-Chr6 11278645 11282319 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst6g01215 7 695 C2H2 Transcription Factor Family AT5G12850 54.507 0.0 699
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Arst6g01215 Ank_2 3e-10 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst6g01215 - - ccaj:109796653 1180.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst6g01215 6 11278645 11282319 Arst6g01215 6 11278645 11282319 ECH