Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst6g01201 ATGGGGACTCCGGAATTCCCTAATCTAGGCAAGCATTGCTCCGTTTCCGATTGCAAGCTCATCGATTTCTTGCCCTTCACTTGCGATCGCTGCAATCAGATATATTGTTTGGAGCACCGAAGTTATATTAAACATAATTGTACAAAGCCCAACAAACATGATGTCACTGTTGTTATATGTCCTCTTTGTGCCAAAGGAGTTCGCCTAATTCCAGATCAAGATCCAAATATAACTTGGGAGAATCATGTTAACACTGAATGCGATCCATCAAATTATGAGAAAGCCACAAAGAAGAAAAAATGCCCTGCCCCTGGATGCAGAGAGGTGTTAGTATTCTCAAACACCATTAAGTGCAGGGACTGCATGATAGACCATTGTTTGAAGCACCGCTTTGGACCTGCACACAAGTGTCCTGGTCCCAAAAAGTTGGAAACAAGCTTTTCATTTATGAGTCTTGTGAATAGAAATAGAAAAGAGGAGCCAAAACCCAATTTGGCTTCAGCCTCATCATCTAAATGGACAACAGGCCTTTTTAATGTAGCTTCTAGTATTATGGCTTCAGCAGAAGCAGGCATTTCCAAATTGAGCGGTGATACTAACCAAAGCCAGCAGACGACAAGGAATGGGACGGGACAAAGCAGTGGCAGTGGAAATAGAAACGGTTTAGTGGAGCAATGTCCTCAGTGTGGTGCTAAGTTTTCCTCGGTCACCACCTTGGTCGATCATGTGCAAAAAGTTCATGAAAGGAGTGGCAACCGTCCTGGGGCAAAGAAGGTGACAATTGATGCATGTCCGAAGTGTAGTAGGGGATTTGTAGACCCAGTTGCTCTTGTGGAACATGTTGAGAGGGACCATGGTGGTAGTTCCAGAGCTTAG 876 0.4418 MGTPEFPNLGKHCSVSDCKLIDFLPFTCDRCNQIYCLEHRSYIKHNCTKPNKHDVTVVICPLCAKGVRLIPDQDPNITWENHVNTECDPSNYEKATKKKKCPAPGCREVLVFSNTIKCRDCMIDHCLKHRFGPAHKCPGPKKLETSFSFMSLVNRNRKEEPKPNLASASSSKWTTGLFNVASSIMASAEAGISKLSGDTNQSQQTTRNGTGQSSGSGNRNGLVEQCPQCGAKFSSVTTLVDHVQKVHERSGNRPGAKKVTIDACPKCSRGFVDPVALVEHVERDHGGSSRA 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst6g01201 291 ProSitePatterns Zinc finger C2H2 type domain signature. 264 285 IPR013087 -
Arst6g01201 291 Gene3D Classic Zinc Finger 192 290 - -
Arst6g01201 291 Pfam C2H2-type zinc finger 225 247 - -
Arst6g01201 291 FunFam AN1-type zinc finger protein 2B isoform X1 3 64 - -
Arst6g01201 291 SUPERFAMILY AN1-like Zinc finger 93 143 IPR035896 -
Arst6g01201 291 ProSiteProfiles Zinc finger C2H2 type domain profile. 262 290 IPR013087 -
Arst6g01201 291 ProSiteProfiles Zinc finger AN1-type profile. 7 55 IPR000058 GO:0008270
Arst6g01201 291 Gene3D - 80 151 IPR035896 -
Arst6g01201 291 ProSiteProfiles Zinc finger C2H2 type domain profile. 224 254 IPR013087 -
Arst6g01201 291 PANTHER ARSENITE INDUCUBLE RNA ASSOCIATED PROTEIN AIP-1-RELATED 5 252 - -
Arst6g01201 291 SMART c2h2final6 262 285 IPR013087 -
Arst6g01201 291 SMART c2h2final6 224 247 IPR013087 -
Arst6g01201 291 ProSitePatterns Zinc finger C2H2 type domain signature. 226 247 IPR013087 -
Arst6g01201 291 ProSiteProfiles Zinc finger AN1-type profile. 95 145 IPR000058 GO:0008270
Arst6g01201 291 Gene3D - 2 60 IPR035896 -
Arst6g01201 291 SUPERFAMILY AN1-like Zinc finger 4 59 IPR035896 -
Arst6g01201 291 SMART AN1_Zf_4 13 52 IPR000058 GO:0008270
Arst6g01201 291 SMART AN1_Zf_4 101 142 IPR000058 GO:0008270
Arst6g01201 291 MobiDBLite consensus disorder prediction 195 221 - -
Arst6g01201 291 Pfam AN1-like Zinc finger 13 51 IPR000058 GO:0008270
Arst6g01201 291 Pfam AN1-like Zinc finger 101 141 IPR000058 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst6g01201 Arst-Chr6 11091191 11093709 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst6g01201 1 291 C2H2 Transcription Factor Family AT2G41835 61.856 4.49e-124 353
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Arst6g01201 zf-AN1 2.9e-07 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst6g01201 6 11091191 11093709 Arst6g01201 6 11091191 11093709 ECH
Arst6g01201 6 11091191 11093709 Arst6g01201 6 11091191 11093709 PCT