Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst6g01045 ATGAAAGGGAGCTTGAAGATGACGAACTTGTTGTCTCGTATCAGAAACTCCTCAAAGAAAACCAAAACTAACACTAACCAACACAGAAACAGAAAAAGATTCAAGCTTAGAAACCAGAACGCCATTTCCATTCCCAAAGACTTGCCTTCTCCCCATGAAGAAGAAGATGAAGAAGAAGAGAACGCTGAAGAAGGTTTCAAGCTCAAAAGCTCTGCCCCATTACTCACACATGGCGTTCAGCCCTTGGGGAACCTCTATCTCAACCCAGGTTCCATCAACTCCAGAGACACAGGCTTAGGTAACCTTCATACCCTTTCTGACGAGCTTGTTCTTGAGATTCTAGGGTTCTTGGATAGTACTGATTTGGGGGTTTTGTCCACTGTGAGTAAGTCCTTTTATGTTTTCACAAACCACGAACCTCTTTGGAGGAACCTTGTGTTGGAGAATCTCAATGGTGGGTTTCAGTTCAATGGGTCTTGGAAATCAACTTATGTTGCTGCTTCCTACCCTTCATTTGATATATCAAGTAATGCACTTAAAAGTTTTAAAGTTAGAGACTTTTATTCTGATTATCTCTTTCAGAGTTGGCTCTGTGCTAATCTTGAAATGAAACCCGAGTGGTTGGAGAGGGATAATATTGTTAGGAAGAGGGGCATTTCAGTTGAAGAGTTTGTGTTGAATTTCGAGGAGCCTAATAAACCGGTGTTGTTGGAAGGGTGTATTGATAATTGGGATGCACTGGAGAATTGGGATAGAGATTATTTGATGCAGTTGTCTGGTGATGTTAAGTTTGCAGTTGGGCCAGTTGAGATGAAGCTTGGAGACTATTTTCGCTACTCAGATCAAGTTAGAGAAGAAAGGCCATTGTATTTGTTTGATCCAAAATTTGCTGAAAAAGTTCCGAAATTAGGTTCTGAATATGAAGTCCCAGTGTATTTTCGAGAGGATTTGTTTGGTGTATTAGGCAGCGAGAGACCTGACTACAGGTGGATCATTATTGGTCCTGCCGGGTCCGGATCATCTTTTCATGTTGATCCGAATTCAACTTCAGCTTGGAATGCAGTGATCAAGGGATCAAAGAAATGGATACTATTTCCTCCTGATGTTATCCCTCCAGGCGTTCATCCTAGTCCTGATGGTGCAGAGGTTGCATCGCCGGTTTCGATAATTGAGTGGTTCATGAACTTCTACGGTGCAACAAAGAATTGGAAAAAGAAACCTGTTGAGTGTGTATGCAAAGCTGGAGAGGTTATCTTCGTACCTAATGGATGGTGGCATTTGGTGATCAACCTGGAGGAGTCCATTGCCATAACCCAAAATTATGTTAGTAGGAGAAATTTGTTAAATGTGCTAGATTTTCTTAATAGGCCAAATGCTAGCACACTGGTGTCTGGAACAAGGGATCGTGTGAATTTGTATGATAAGTTTAAGAATGCTATTGAGGCTTCTTTTCCTGGAGAAATAGATGAACTGGCCAGAAAAGCAGAGAAAAAGATCCAGCAGAAGAAACTCTCATTCTGGGATTCTGTCTCAGATTCCAATGCCGGAGCTTTCAAGTTCTCTTTCTAG 1569 0.4162 MKGSLKMTNLLSRIRNSSKKTKTNTNQHRNRKRFKLRNQNAISIPKDLPSPHEEEDEEEENAEEGFKLKSSAPLLTHGVQPLGNLYLNPGSINSRDTGLGNLHTLSDELVLEILGFLDSTDLGVLSTVSKSFYVFTNHEPLWRNLVLENLNGGFQFNGSWKSTYVAASYPSFDISSNALKSFKVRDFYSDYLFQSWLCANLEMKPEWLERDNIVRKRGISVEEFVLNFEEPNKPVLLEGCIDNWDALENWDRDYLMQLSGDVKFAVGPVEMKLGDYFRYSDQVREERPLYLFDPKFAEKVPKLGSEYEVPVYFREDLFGVLGSERPDYRWIIIGPAGSGSSFHVDPNSTSAWNAVIKGSKKWILFPPDVIPPGVHPSPDGAEVASPVSIIEWFMNFYGATKNWKKKPVECVCKAGEVIFVPNGWWHLVINLEESIAITQNYVSRRNLLNVLDFLNRPNASTLVSGTRDRVNLYDKFKNAIEASFPGEIDELARKAEKKIQQKKLSFWDSVSDSNAGAFKFSF 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst6g01045 522 Gene3D - 95 171 - -
Arst6g01045 522 ProSiteProfiles JmjC domain profile. 298 458 IPR003347 -
Arst6g01045 522 Pfam Cupin-like domain 223 441 IPR041667 -
Arst6g01045 522 SMART fbox_2 105 145 IPR001810 GO:0005515
Arst6g01045 522 MobiDBLite consensus disorder prediction 22 36 - -
Arst6g01045 522 SUPERFAMILY F-box domain 97 165 IPR036047 GO:0005515
Arst6g01045 522 Gene3D Cupin 183 443 - -
Arst6g01045 522 SMART cupin_9 289 458 IPR003347 -
Arst6g01045 522 Pfam F-box-like 107 147 IPR001810 GO:0005515
Arst6g01045 522 MobiDBLite consensus disorder prediction 1 65 - -
Arst6g01045 522 SUPERFAMILY Clavaminate synthase-like 215 456 - -
Arst6g01045 522 FunFam F-box protein At1g78280 193 443 - -
Arst6g01045 522 ProSiteProfiles F-box domain profile. 99 145 IPR001810 GO:0005515
Arst6g01045 522 PANTHER ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD 99 520 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst6g01045 Arst-Chr6 9441260 9443535 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst6g01045 90 447 Glycosyltransferase AT1G78280 38.147 3.34e-78 262
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Arst6g01045 Cupin_8 6.4e-24 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst6g01045 - - lja:Lj1g3v4753250.1 878.626
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst6g01045 6 9441260 9443535 Arst6g01045 6 9441260 9443535 ECH