Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst6g00961 CAACAACCGCCTTACGCCGCATACAGCTATCCTCCTCCACCGTCACACCACCACCAATTCCAGCGCGACACTCAGCAACTCTTCCAGCGCGACGCCCAGACCATCACCCCGGAGGCTCTCGAGAGCGTGAAGGCCGCCATAGCCAGCAGCGACGTCGACCACAAGACCGACGCGAAGCGGAAGGCAGTTCCCCGCCGTGCCGCTGGGCAGACGTGGGAGGATCCCTCGCTGGCCGAGTGGCCGGAGAACGACCATCGCTTGTTCTGCGGCGATCTAGGGAACGAGGTGAACGACGACGTTTTGTCGAAGACGTTCACAAGATTCCCTTCGTTTAACATGGCGAGAGTTGTGAGGGACAAGCGATCAGGGAAGACCAAAGGGTACGGATTCGTGAGCTTTGCGGACCCTTCGGACCTCGCTGTGGCTCTGAAGGAGATGAACGGGAAGTACGTTGGGAACAGGCCAATCAAGCTATGCAAGAGCAAGTGGAAGGAGAGGACCGATTATGATGCTGTTGATAAGCAGAAGAAGCACTCCAAGAAGAAGTTGAAGTCTTCCTCCAAGGTTGGCGTGTTGCATTACTAA 585 0.5692 QQPPYAAYSYPPPPSHHHQFQRDTQQLFQRDAQTITPEALESVKAAIASSDVDHKTDAKRKAVPRRAAGQTWEDPSLAEWPENDHRLFCGDLGNEVNDDVLSKTFTRFPSFNMARVVRDKRSGKTKGYGFVSFADPSDLAVALKEMNGKYVGNRPIKLCKSKWKERTDYDAVDKQKKHSKKKLKSSSKVGVLHY 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst6g00961 194 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 87 157 IPR000504 GO:0003723
Arst6g00961 194 CDD RRM_RBM42 79 161 IPR034215 -
Arst6g00961 194 FunFam RNA-binding protein 42 19 170 - -
Arst6g00961 194 Gene3D - 21 176 IPR012677 -
Arst6g00961 194 SMART rrm1_1 86 159 IPR000504 GO:0003723
Arst6g00961 194 SUPERFAMILY RNA-binding domain, RBD 68 165 IPR035979 GO:0003676
Arst6g00961 194 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 85 163 IPR000504 GO:0003723
Arst6g00961 194 MobiDBLite consensus disorder prediction 1 23 - -
Arst6g00961 194 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 22 176 - -
Arst6g00961 194 MobiDBLite consensus disorder prediction 47 76 - -
Arst6g00961 194 MobiDBLite consensus disorder prediction 48 67 - -
Arst6g00961 194 MobiDBLite consensus disorder prediction 170 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst6g00961 Arst-Chr6 8642113 8642948 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst6g00961 35 165 Eukaryotic Initiation Factors Gene Family AT1G71770 25.000 6.12e-12 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst6g00961 K25079 - adu:107484659 328.946