Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Arst6g00950 | ATGGCAGAGTTCTCTTCCGCATCAACTCTTCCAACTCCACCTGAATCTCAAACTAGACTACACTTTGGGAAATTGCAGCACGGGTGCGAACACTACAAGAGACGTTGCAAAATTCGAGCTCCATGCTGCAACCAGATCTTCTCTTGCCGTCACTGCCACAACGACGCCATGGGTTCACTTAGCGATCCCAAGGAGCGCCATGAACTTGTCAGGCGCGATGTTAAGCAAGTTATATGTTCTATCTGTGATACTGAGCAAGAGGCTGCCAAGGTCTGTGCTAACTGTGGCGTCAACATGGGAGAATATTATTGTGAAATTTGCAAATTTTATGATGATAATACAGAGAAAGGACAGTTCCATTGCGACGAATGCGGGATTTGTAGGGTTGGTGGTCGTGATAATTTCTTCCACTGTCCGACATGTGGCTCTTGCTATTCAGTGAACTTGCAAGGCAACCACCCGTGTGTGGAGAACTCAATGAAGAGTTTCTGTCCTGTCTGTTATGAGTATCTGTTTGATTCAATAAAAGGTACCACAATTATGACTTGTGGACACACAATGCATATGGATTGCTTTTATGAAATGGCAGAGCAAAATCAGTATCGCTGTCCTATATGCTCAAAGACAGTTTTTGATATGTCTCGGAGCTGGGAACATTTAGATCAGGAGATAATTGATGATCAAATTCTGGGTTTCTTTGCCAATTTCCTTGGCATCTTCATCTTTGTACTGGTGATAGCTTATCTTTTTGTTATGGCTGATCCAATGTATGAAGGGAATTAG | 783 | 0.4304 | MAEFSSASTLPTPPESQTRLHFGKLQHGCEHYKRRCKIRAPCCNQIFSCRHCHNDAMGSLSDPKERHELVRRDVKQVICSICDTEQEAAKVCANCGVNMGEYYCEICKFYDDNTEKGQFHCDECGICRVGGRDNFFHCPTCGSCYSVNLQGNHPCVENSMKSFCPVCYEYLFDSIKGTTIMTCGHTMHMDCFYEMAEQNQYRCPICSKTVFDMSRSWEHLDQEIIDDQILGFFANFLGIFIFVLVIAYLFVMADPMYEGN | 260 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Arst6g00950 | 260 | PANTHER | RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 | 21 | 226 | - | - | |
| Arst6g00950 | 260 | Pfam | Ring finger domain | 164 | 206 | IPR001841 | - | |
| Arst6g00950 | 260 | ProSiteProfiles | Zinc finger CHY-type profile. | 22 | 97 | IPR008913 | GO:0008270 | |
| Arst6g00950 | 260 | ProSiteProfiles | Zinc finger RING-type profile. | 164 | 207 | IPR001841 | - | |
| Arst6g00950 | 260 | SUPERFAMILY | Zinc hairpin stack | 100 | 157 | IPR037275 | - | |
| Arst6g00950 | 260 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 152 | 230 | IPR013083 | - | |
| Arst6g00950 | 260 | SUPERFAMILY | RING/U-box | 163 | 213 | - | - | |
| Arst6g00950 | 260 | SUPERFAMILY | CHY zinc finger-like | 26 | 98 | IPR037274 | GO:0008270 | |
| Arst6g00950 | 260 | ProSiteProfiles | Zinc finger CTCHY-type profile. | 99 | 163 | IPR017921 | - | |
| Arst6g00950 | 260 | Pfam | Oligosaccaryltransferase | 225 | 254 | IPR018943 | - | |
| Arst6g00950 | 260 | SMART | ring_2 | 164 | 206 | IPR001841 | - | |
| Arst6g00950 | 260 | Pfam | CHY zinc finger | 29 | 109 | IPR008913 | GO:0008270 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Arst6g00950 | Arst-Chr6 | 8579910 | 8582778 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Arst6g00950 | 27 | 235 | C2H2 Transcription Factor Family | AT3G18290 | 39.535 | 4.75e-41 | 148 |