Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst6g00922 ATGTCAAACAATATGTCAGGTAATGAAGATGGAAGCTTCTCCTCTGGAAACACTGGAGAAGAAGAAGTTCATCAAGAAAACAAGCAGCAGCAGCAGCAAACCAATAAAAAGAAAAGAAACCTACCAGGAACCCCAGATCCAAGTGCAGAAGTAGTAGCTCTATCACCAACAACATTAATGGCAACAAACAGATTCGTGTGTGAGATATGCAACAAAGGATTTCAGAGAGACCAAAATCTTCAACTACACAGGAGAGGACACAATCTACCATGGAAGCTAAGGCAAAGAACAACCACAGAGGTCAAGAAGCGTGTCTACGTCTGCCCTGAGCCCACGTGCGTTCACCACAACCCATCACGTGCTCTTGGCGACCTCACTGGCATCAAGAAACACTTCAGCCGCAAACATGGCGAAAAGAAATGGAAGTGTGACAAGTGTTCCAAACGCTACGCTGTTCAATCTGATTGGAAAGCTCACCTCAAAACTTGCGGCACTCGCGAGTATAAGTGTGATTGCGGCACCATCTTTTCCAGAAGAGACAGTTTCATTACTCATCGTGCTTTCTGTGATGCTTTGACCGAAGAAAATAACAAACTTTCTTCCACCCATCAGGGTTTGTTAACAACTGGCATGCCCCCAAGTCAGATTCCATTAACCACTTCTTCTTCTTCATCAGATCAATTATTCATCACTGATCCACCACTTATCATTCCAACAACAACTCCTTTCAATAACTCCATCTTCTCATCGACAACTACTTCTTCTTCTTGTTCTTCTTCAACGCTTCAGCTGAGTTCTAGTGGCTTCAACAATGTTATTCTTTCTAATCCATCTTCTTCATCATCGCCTCACATGTCTGCAACTGCTCTGTTGCAGAAAGCAGCTCAAATGGGTGCAACTGCAAGTAACAACAGCATGAATTATTCACCCATGATGCAGAAAAGCTTCTCCATGGGAACAACTACCATGGCTGGAGTAGTTAGTGGTGGCCATGATGCTGCATTTACAAACCAATTGTTTCAGAAAGAAATCGTCTCATCACAACTGTTTGATGCAAACACTACTACTAATAGTAGTAGTAATAATGATATGGGAATGTATGGTCAAATGTTCATGGGAACAATTACTAGTAATAATAATAATAATGGGTTGATGAAGATTAGTAGTGATGTGGAACAAGAGATTAGTGATGATGATAATAATAATAATAATAATAACAATACGATAATGGTGGAGGCATCAAGGTTTGGAGGAGGGAGTGGAAGGGATGATGATATTGCAACTGTTCATGATTTCTTGGGAATTGGTGGAGCTTCATCAATTGCTTCAACAGCAACAGTGAGTTTGCATGAATCAGAGCAACAGCAAAGATTAGTAGCAGAGACATTGAATCAGCAGAGGTTGCAGATTATGAACCACTTTCATCACCATATTCCTCATCATGCTGCAGATTCAGCTATTGACAAAACTATGTGGGATGTCTGA 1485 0.4121 MSNNMSGNEDGSFSSGNTGEEEVHQENKQQQQQTNKKKRNLPGTPDPSAEVVALSPTTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTTTEVKKRVYVCPEPTCVHHNPSRALGDLTGIKKHFSRKHGEKKWKCDKCSKRYAVQSDWKAHLKTCGTREYKCDCGTIFSRRDSFITHRAFCDALTEENNKLSSTHQGLLTTGMPPSQIPLTTSSSSSDQLFITDPPLIIPTTTPFNNSIFSSTTTSSSCSSSTLQLSSSGFNNVILSNPSSSSSPHMSATALLQKAAQMGATASNNSMNYSPMMQKSFSMGTTTMAGVVSGGHDAAFTNQLFQKEIVSSQLFDANTTTNSSSNNDMGMYGQMFMGTITSNNNNNGLMKISSDVEQEISDDDNNNNNNNNTIMVEASRFGGGSGRDDDIATVHDFLGIGGASSIASTATVSLHESEQQQRLVAETLNQQRLQIMNHFHHHIPHHAADSAIDKTMWDV 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst6g00922 494 Gene3D Classic Zinc Finger 42 110 - -
Arst6g00922 494 FunFam protein indeterminate-domain 12-like 44 112 - -
Arst6g00922 494 MobiDBLite consensus disorder prediction 1 20 - -
Arst6g00922 494 Gene3D Classic Zinc Finger 119 199 - -
Arst6g00922 494 SMART c2h2final6 106 136 IPR013087 -
Arst6g00922 494 SMART c2h2final6 65 87 IPR013087 -
Arst6g00922 494 SMART c2h2final6 141 161 IPR013087 -
Arst6g00922 494 MobiDBLite consensus disorder prediction 1 49 - -
Arst6g00922 494 ProSiteProfiles Zinc finger C2H2 type domain profile. 65 87 IPR013087 -
Arst6g00922 494 ProSitePatterns Zinc finger C2H2 type domain signature. 67 87 IPR013087 -
Arst6g00922 494 FunFam protein indeterminate-domain 5, chloroplastic-like 119 198 - -
Arst6g00922 494 SUPERFAMILY beta-beta-alpha zinc fingers 64 161 IPR036236 -
Arst6g00922 494 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 20 453 IPR031140 -
Arst6g00922 494 Pfam Zinc-finger of C2H2 type 65 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst6g00922 Arst-Chr6 8256730 8259131 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst6g00922 34 306 IDZ Gene Family AT3G50700 57.453 4.11e-116 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Arst6g00922 zf-met 0.0035 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst6g00922 - - ahf:112756635 575.474
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst6g00922 6 8256730 8259131 Arst6g00922 6 8256730 8259131 ECH
Arst6g01911 6 25747391 25749736 Arst6g00922 6 8256730 8259131 PCT