LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Arst6g00904	ATGGTCGAAACCAGACGCAGCTCTTCCGTTTCGTCTTCTTCCTCCAAGCGCTCTCTTCCTTCGCCTTCTTCTCCCAACGCTAAACGATCAAAGGTGACCCAGGACGCCGCATCAGTTGTTCTTCCCTCTGAGGAGATTCTCGATGCTGCCAACGAATCTGGGAATGGATCTGGTGACTCGGACCTACGTTCCTCTGATCTGCAAGATACGAGTTCGTTGAAGGAGGTTGTGAACGTTTGCGATGCAGACAAGTCTCCTTCTCCGCCCGTTGAAGAGGTGGTCATCGCCTTGCCGGAGTCTTTGGACGCCAAAGAAGCCGACAAGACCGAGGTGGCTGGCGCCGCCGCCGCTGCCGTAGACGAGCTTCCTCGTTCAAAGAAACGCTCCGCTAATTCTGCCATGGCAGGACCGAAGGTCACTTGGGGGATGCTTATCTCTCAGTGCTCAGAGAATCCTCATCTCACCTTGTGTGAACCTCTGTTCACTGTGGGTCAAGGCCGTCAGTGCCATTTGTGGCTTAAAGATCCAGCTGTTAGTAATGTTTTGTGCAAGTTGAGCCACATTGAGCATGGTGGTTCATCTTTTGCGTTACTAGAAATCACAGGGAGTAAAGGTACTGTTCAAGTTAATGGCAAGATGTATCGAAAGAATGCCCGAGTGGTTTTGAGCGGAGGTGATGAGGTGGTCTTCAACATTTATGGCAAGCATGCTTATGTGATATATATATGTCAGCAGCTCACCAATATTAATGCTACTACTGGTGTGCCTTCTCTGAGTATTTTAGAAGCCCAAAGTGATCTAATAAGAGGAATGCAGATTGAAGCTAGATCTAGTGACCCTTCAACTGTTGATGGAGCATCGATGTTGGCCTCTTTGTCTAATGTTCACAAAGATATATCAATCATCACACCTTCTGGTAAAACTTGCAATAATGTCCAACAAACTGCTGGAGTTTCATCATTATCTCCTGGCAATGAGGATGGCATTCCAGATAATACAGTGAAGGATGGTACTAGCATTAATGAACCAGCAGGAGTTTTTTCCGCTGAGAAAACTGTTCCTGCATCCTCTACAACTGTTGAGAAAAATTCTAATGTTGATAGCATGGCAAGTTCTACTCTGAATGCAGATGTTGGGAAGACAAGTGCGGGTAGTGATCAATTACGACCATTACTGCGGATGTTTGCTGCCCCTTGTCCTGAATTAGATAATATTTACAAGATATCTGAAGAGAAGAGTGAGTTAAGAGAACTACTTCTTAAGTATCTTGATTCCCCGACAGTATTGGCATCTTCTAAGCAGCAAGCACTTAAGGACAGTTTGAAACAAGGAATTCTTAGTCATGAAGATATTGATGTGTCTTTTGAAACTTTCCCATATTATCTAAGTGATACGACAAAGAATGTTTTGATTGCTTCTACTTATATGCATCTGAAAAGCAAAGGCTTTGGAAAATATGCTTCAAACCTCTCTTCAGTGTCCCCACGGATATTATTATCTGGTCCCGCAGGCTCCGAAATATACCAGGAAACTTTGTCCAAGGCACTTGCTAAGCATTTTTCTGCCAGCCTACTAATTGTGGATTCTCTTTTGCTATCTGGTGGCACATCATTAACAGAAGTGCACAATGCTAAAGAAAGTGCAAAGCCTGAAAGAACACCTGCAGTTGCTAAGAGAAGTACTCAGGTTTCCACATCACAGCACAAGAAATCAGTCTCTAAACTAGTCTCTAGTGTTGATGGGCAAATTATTGGTGGATCCACATTCTGTTCTCCAGGGTGGGTGAAACTAGAGACTAATGTCGGGTCATCAAAAGCCACTATTCTTAAAAATGGTGATCGAGTAAAATTTATTGGTCACATTCATTCACCCTCATCGCCACAAACTAGCATAGTGGATGTAGTGTACTTTGTGAAAGAATTGTGTTTATGGCTTCTTTCTTGTGCTCTGGCCATGGATATGTTTCATGCTTTCATTGTAGTTTCCATTTATGCTTTGCAGAGAGACTATTTTCTGTTTACATTGCTAATGAAACTTCTATTTGTGTCAATTCCCTATATTCTAAAAGAAATTTTGCTATGCAATAATGTATATGTACGCCTTGAGGGAGAAGGGGCTAATCAGTTACTGCGGGATGGTTCTGGAGGAGATGACTTTGACAAGATCGCAGTTAATGATATTTTTGAGGTTGTCTCCAATCAGAGTAAAAGTGCTGCACTAGTTGTTTTCATTAAAGATATTGAGAAGGCGATCATTGGTAATTCAGACATTTTGAAGAGTAAACTTGAAAGCTTACCACAAAATGTTGTTGTAATTGGCTCACATACTCAGCTCGATAGTCGAAAGGACAAGACCACACATGCTGGCATTCTGTTAACAAAGCTTGGGGGCAATCCAGCAGCATTACTTGATCTTTCTTTCCCGGATAAGTTCACTAGATTGCTTGATAGGAGCAAAGAAAGTCCCAAAGCAGTAAAGCAACTTACTCGCCTTTTTCCGAATAGGGTGCCAATACAACTTCCTGAGGATGAGCTTTTGCTTTCTGATTGGAAGCAGCAGTTGGAACGAGATATTGAGACTATGAAGGCTCAATCCAATACTGTCAGCATTCGAACAGTTCTCAACCGAATTGGACTGGAATGTCCTGAACTTGAGACACTCTGCATCAAAGATCAAGCTCTAACAGCAGAAAGTGTGGAAAAAATCATTGGCTGGGCTATAAGTCACCATTTTATGCATTCGGCTGAGGGTTCTGTCAAAGACTGTAAGCTTGTGATATCTGCAGAAAGCCTTAAGTATGGGCTGAACATTCTACAGGGCATTGAAGGTGAAAATAAGAATTCAAAGAAATCGCTTAAGGATGTGGTTACTGAGAATGAATTTGAGAAAAAACTGCTTGCTGATGTGATTCCTCCAAGTGATATTGGGGTCACTTTTGATGATATTGGGGCTTTAGAAAACGTGAAGGACACCTTGAAGGAGTTGGTCATGCTTCCTCTACAGAGACCTGAACTCTTTAGCAAAGGACAGTTGGCTAAGCCCTGCAAGGGAATACTGCTCTTTGGCCCCCCTGGTACTGGAAAGACAATGCTTGCGAAGGCTGTAGCAACCGAGGCTGGAGCCAACTTTATTAACATTTCAATGTCTAGCATTACTTCAAAGTGGTTTGGGGAAGGAGAAAAATATGTCAAAGCTGTCTTTTCTCTAGCCAGCAAGATTGCCCCAAGTGTTATTTTTGTCGATGAGGTCGACAGTATGTTAGGAAGACGTGAAACTCCTGGCGAACATGAGACTATGCGTAAAATGAAGAATGAGTTCATGATGAATTGGGATGGTCTGCGAACAAAAGATAAAGAGCGTGTACTTGTTCTCGCTGCTACAAATAGGCCCTTTGATCTTGATGAGGCTGTTATTAGGAGGCTTCCAAGAAGATTTATGGTTAATTTGCCAGATGCTCCAAACAGGGAAAAAATTCTGAGAGTCATCTTAGCAAAAGAAGATTTGGCACCGGATGTTCATTTGGAAGAAATAGCAAATATGACTGATGGATATTCGGGGAGTGACCTAAAGAATCTCTGTGTAACAGCAGCTTATTGCCCAATAAGAGAGATCTTGGAAAAGGAAAAGGAAGAGAGAAGTGTAGCATTGGCCGAGAACAGACCTTTACCTGGATTATGTAGCAGTGCTGATGTCCGTTCCTTAAAGATGGATGATTTGAGATATGCACAAGAGCAGGTGTGTGCGAGCTTCTCGTCAGATTCGTTGAATATGAACGAGCTACTTCAATGGAACGACCTTTATGGAGAAGGTGGATCAAGGAGAACGAGATCTTTGAGCTATTTCATGTAA	3849	0.4263	MVETRRSSSVSSSSSKRSLPSPSSPNAKRSKVTQDAASVVLPSEEILDAANESGNGSGDSDLRSSDLQDTSSLKEVVNVCDADKSPSPPVEEVVIALPESLDAKEADKTEVAGAAAAAVDELPRSKKRSANSAMAGPKVTWGMLISQCSENPHLTLCEPLFTVGQGRQCHLWLKDPAVSNVLCKLSHIEHGGSSFALLEITGSKGTVQVNGKMYRKNARVVLSGGDEVVFNIYGKHAYVIYICQQLTNINATTGVPSLSILEAQSDLIRGMQIEARSSDPSTVDGASMLASLSNVHKDISIITPSGKTCNNVQQTAGVSSLSPGNEDGIPDNTVKDGTSINEPAGVFSAEKTVPASSTTVEKNSNVDSMASSTLNADVGKTSAGSDQLRPLLRMFAAPCPELDNIYKISEEKSELRELLLKYLDSPTVLASSKQQALKDSLKQGILSHEDIDVSFETFPYYLSDTTKNVLIASTYMHLKSKGFGKYASNLSSVSPRILLSGPAGSEIYQETLSKALAKHFSASLLIVDSLLLSGGTSLTEVHNAKESAKPERTPAVAKRSTQVSTSQHKKSVSKLVSSVDGQIIGGSTFCSPGWVKLETNVGSSKATILKNGDRVKFIGHIHSPSSPQTSIVDVVYFVKELCLWLLSCALAMDMFHAFIVVSIYALQRDYFLFTLLMKLLFVSIPYILKEILLCNNVYVRLEGEGANQLLRDGSGGDDFDKIAVNDIFEVVSNQSKSAALVVFIKDIEKAIIGNSDILKSKLESLPQNVVVIGSHTQLDSRKDKTTHAGILLTKLGGNPAALLDLSFPDKFTRLLDRSKESPKAVKQLTRLFPNRVPIQLPEDELLLSDWKQQLERDIETMKAQSNTVSIRTVLNRIGLECPELETLCIKDQALTAESVEKIIGWAISHHFMHSAEGSVKDCKLVISAESLKYGLNILQGIEGENKNSKKSLKDVVTENEFEKKLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFSKGQLAKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRETPGEHETMRKMKNEFMMNWDGLRTKDKERVLVLAATNRPFDLDEAVIRRLPRRFMVNLPDAPNREKILRVILAKEDLAPDVHLEEIANMTDGYSGSDLKNLCVTAAYCPIREILEKEKEERSVALAENRPLPGLCSSADVRSLKMDDLRYAQEQVCASFSSDSLNMNELLQWNDLYGEGGSRRTRSLSYFM	1282

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Arst6g00904	1282	MobiDBLite	consensus disorder prediction	1	37	-	-
	Arst6g00904	1282	CDD	RecA-like_ATAD1	981	1147	-	-
	Arst6g00904	1282	PANTHER	AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED	435	1281	-	-
	Arst6g00904	1282	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	977	1257	IPR027417	-
	Arst6g00904	1282	SMART	AAA_5	1014	1151	IPR003593	GO:0016887
	Arst6g00904	1282	Pfam	AAA+ lid domain	1171	1207	IPR041569	-
	Arst6g00904	1282	ProSitePatterns	AAA-protein family signature.	1121	1140	IPR003960	GO:0005524\|GO:0016887
	Arst6g00904	1282	Gene3D	-	140	249	-	-
	Arst6g00904	1282	Coils	Coil	851	871	-	-
	Arst6g00904	1282	SUPERFAMILY	SMAD/FHA domain	144	240	IPR008984	GO:0005515
	Arst6g00904	1282	MobiDBLite	consensus disorder prediction	542	563	-	-
	Arst6g00904	1282	FunFam	p-loop nucleoside triphosphate hydrolase superfamily protein	976	1152	-	-
	Arst6g00904	1282	MobiDBLite	consensus disorder prediction	1	70	-	-
	Arst6g00904	1282	Gene3D	-	1150	1244	-	-
	Arst6g00904	1282	Gene3D	-	976	1256	IPR027417	-
	Arst6g00904	1282	Pfam	ATPase family associated with various cellular activities (AAA)	1018	1147	IPR003959	GO:0005524\|GO:0016887
	Arst6g00904	1282	MobiDBLite	consensus disorder prediction	53	70	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Arst6g00904	Arst-Chr6	8143714	8152814	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Arst6g00904	1013	1218	Calmodulin-binding Proteins	AT3G56690	36.190	2.46e-32	134

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Arst6g00904	-		-	adu:107492402	2403.25