Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst6g00896 ATGAAGTTCTGCAAGAGATACCAGGAGTACATGCAAGGCCAGGAGAAGAAGCTTCCTGTTGTTGGCTTCAAGAAGCTCAAGAAGATGTTGAAGCGCTGCTCCCGACGACACTCTTCATCATCATCATCATCTCGATCATCTTCTTCTCTTCCACTCAACACCTGCCCAGATCAATGCCCAGTGTGCGATGGAACCTTCTTCCCTTCGCTTCTCACTGAAATGTCAGCCATAGTAGGCTGCTTCAACCAGCGGGCTCAGAAATTGCTGGACCTGCACCTCGCTTCTGGTTTCAGAAAGTACTTCTTCTGGTTCAAAGGCAAATCACAAGGGAGCCACAACGCTCTCATTCAAGAAGGAAAAGACCTTGTTACTTATGCACTCATAAACGCTGTTGCAATCAGAAAAATACTGAAGAAATATGATAAGGTTCATTATTCCAGGCAAGGACAAATGTTCAAGTCACAGGTCCAGAGTATGCACAAGGAAATTCTGCAAAGTCCTTGGCTTTGTGAGCTTATGGCCTTCCACATCAATCTGAGGGAAACTAAGGTCCAGTCTAGGAAGGCACATGCTTTCTTTGATGGATGTTCTCTCTCATTTAAGGATGGAAAACCAGCACTCACTTGTGAGCTACTTGATTCCATCAAAATTGATATAGACTTGACTTGTTCTATATGCCTGGACACAGTGTTTGATCCAGTTTCTCTAACCTGTGGCCACATATTCTGCTATATTTGTGCTTGCTCTGCTGCATCAGTATCTATTGTTGATGGAATTAAGGCATCCGATTCTAAGAAAAAATGTCCTTTGTGCCGAGAGAGTGGAGTGTATGAAGGAGCTGTTCGCTTGGAAGAACTAAATATACTGTTGGGCCGAAACTGCCAGAAATACTGGGAGGAAAGGGCTCAATCAGAAAGGGTAGAGAGGCTTAAACAGATAAAGGAACACTGGGAATCGCAATGCAGGTTATTCGTAGGTGTCTAA 984 0.4411 MKFCKRYQEYMQGQEKKLPVVGFKKLKKMLKRCSRRHSSSSSSSRSSSSLPLNTCPDQCPVCDGTFFPSLLTEMSAIVGCFNQRAQKLLDLHLASGFRKYFFWFKGKSQGSHNALIQEGKDLVTYALINAVAIRKILKKYDKVHYSRQGQMFKSQVQSMHKEILQSPWLCELMAFHINLRETKVQSRKAHAFFDGCSLSFKDGKPALTCELLDSIKIDIDLTCSICLDTVFDPVSLTCGHIFCYICACSAASVSIVDGIKASDSKKKCPLCRESGVYEGAVRLEELNILLGRNCQKYWEERAQSERVERLKQIKEHWESQCRLFVGV 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst6g00896 327 SMART ring_2 223 271 IPR001841 -
Arst6g00896 327 CDD RING-HC_BAH1-like 213 286 - -
Arst6g00896 327 Pfam Zinc finger, C3HC4 type (RING finger) 220 273 - -
Arst6g00896 327 ProSiteProfiles Zinc finger RING-type profile. 223 272 IPR001841 -
Arst6g00896 327 MobiDBLite consensus disorder prediction 33 52 - -
Arst6g00896 327 SUPERFAMILY RING/U-box 216 275 - -
Arst6g00896 327 CDD SPX_BAH1-like 2 150 - -
Arst6g00896 327 ProSiteProfiles SPX domain profile. 1 154 IPR004331 -
Arst6g00896 327 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BAH1 1 326 IPR033326 -
Arst6g00896 327 MobiDBLite consensus disorder prediction 36 52 - -
Arst6g00896 327 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 210 324 IPR013083 -
Arst6g00896 327 ProSitePatterns Zinc finger RING-type signature. 238 247 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst6g00896 Arst-Chr6 8098939 8101839 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst6g00896 220 272 C3H Transcription Factor Family AT4G28270 41.379 4.39e-07 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst6g00896 K16275 - gmx:100797432 570.852
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst6g00896 6 8098939 8101839 Arst6g00896 6 8098939 8101839 ECH