Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst6g00796 ATGGTGAATTTCAGCGGAGACCCTCACAGTTACACTCAACCTCAAACCCAAGACAACAGCAACCACTTCAACCACCCTAACGGCAACTACAACTGCCACAACGGGGTCAATGCCTTCCCCAACCCTAACCCAATCGATTCTCCTGCTTCTGGATATAACCATTCACGTCCACCCCGCAAGCGAGCTTGGACTTCTACTTCTCCAGATCAAGCAGATGGTGCGTGTCATGTAAAAGTTTATGTTGCACCGGTTCCAAGAACAGCTACCGAGACTGATATCCGCCTGGTGTTTGAAGGGCATGGGACTATTGTTGAGGTTGTTCTTTTAAAAGATAAGAGAACTGGTGGACGACAAGGAAGTTGTTTTGTGAAATATGCAACATTAGATGAAGCTGAGAGAGCCATTAAGGCTTTAAACAATAAGTATACATTTCCTGGGGAATCATCTCCTGTTGTTGTCAGATATGCTGATCGGGAACGTGAACGGCTTGGGGTTCGAACATTTGTACGGAACGTGGAAAAGAAAGATCCTTCAGAAGAGGTTGCTGATAAAGTATTTGTTAGTTGCATCAACAAAGAAGCTTCGAGAAACGAAATAGAAGAAATATTTTCTGCTTATGGACATATAGAAGATGTCTACCTGCACAATCGTGGATATGCTTTTGTCAAATTTTCTAATAGAGAAATGGCGTTGGCGGCAATCAAAGGGCTGAACAACACATTCACAATGAGAGGTTGTGATCATCCATTAATTGTTCGTTTTGCGGAGCCAAAGAAACCAAAGACTGGAGATCCAAGGCCAGTGCCAAATTTCGGTGATCCAAATACTAGAGGAAGTATTATGCCTATGGCTCCACATCGTTCTACTATTGCACACCCACAAGTTTCTTCTCATATGCAGAATTGGGAACCTGGGGCTAACATGGTGCCCCAGCCATTTCCTATCCAACAGCCACATTCACAATTGACTTCGATGCCTTTGCAGTGCAATCAAGCTCCAAAGATGTCTTCTCAACCATTTTATCCTGAGGTGCAGAGACAGTTGCATCCAACAGATTTGTCAGTGCAAAATATAGAGCAGCAGCCAAGTTCACAGACACCTACTCAGAGTGTAAGCAATTCTAATACAGTTGCTGGCAGTATTTCACCTGATATGCCTACTAGTCCTGTAGATGAAGATTTTCCCGAGTGTGAGTGGAGTGAGCACTACTGCCCTGATGGTCATACTTACTACTACAATTGCGTCACTTGTGAAAGCAAATGGGAAAAACCTGAGGAGTATGCTCTCTATGAGAGAGGGTCTCTGAAGCAGCAAAAGCATGAGGATCATAAAGAATCGCAGGAGCTGCAGGAGCACGATGATCATAAAGATTCGCAGAAGCTGCATGAGCTCAAGGATCATGAAGATTCACGGAACCTGCAGGAACACGTGAATCATAAAGATTTTCAGAAACTGCAAGAGCACGAGGATCATAAAGATTTACAGAAGCTGCAAGAGCACGGGGATTATAATGATTCACAGAGGCAGCAAGAGCACAGGGATCATACTGATTCACGGAAGCAGCAAGAGCACGAAGATCATAAAGATTTGCAGAGGCTGCAGGAGCATGAGGATCATAAAGATTTGCAGAGGCTGCAGGAGCACGAGGATCATAATGGTTCACAGAGGCAACAAGGGCACGGGGATCATAATGATTCACAGAAGCCACAAGAGAACGAGGATCATAAAGAATCACAGCATCAGCAAGAGCATGAGGATCATAAATATTCACAGAAGCAGCAAGAGAACGAGGATCATAAAGAATCACAGAAGCTGCAAGAGCTTGAGGATGACAGCTGTCTTTTGTCACAATTATCATTATCCTCCTCTGCACAAGTTGCTCAAAGCCAAAAGGAAACAGATAATGATCAAGGGCACTCAAAAGCAAGTTCTGTTGTTGGAGAGGGGTGA 1950 0.4415 MVNFSGDPHSYTQPQTQDNSNHFNHPNGNYNCHNGVNAFPNPNPIDSPASGYNHSRPPRKRAWTSTSPDQADGACHVKVYVAPVPRTATETDIRLVFEGHGTIVEVVLLKDKRTGGRQGSCFVKYATLDEAERAIKALNNKYTFPGESSPVVVRYADRERERLGVRTFVRNVEKKDPSEEVADKVFVSCINKEASRNEIEEIFSAYGHIEDVYLHNRGYAFVKFSNREMALAAIKGLNNTFTMRGCDHPLIVRFAEPKKPKTGDPRPVPNFGDPNTRGSIMPMAPHRSTIAHPQVSSHMQNWEPGANMVPQPFPIQQPHSQLTSMPLQCNQAPKMSSQPFYPEVQRQLHPTDLSVQNIEQQPSSQTPTQSVSNSNTVAGSISPDMPTSPVDEDFPECEWSEHYCPDGHTYYYNCVTCESKWEKPEEYALYERGSLKQQKHEDHKESQELQEHDDHKDSQKLHELKDHEDSRNLQEHVNHKDFQKLQEHEDHKDLQKLQEHGDYNDSQRQQEHRDHTDSRKQQEHEDHKDLQRLQEHEDHKDLQRLQEHEDHNGSQRQQGHGDHNDSQKPQENEDHKESQHQQEHEDHKYSQKQQENEDHKESQKLQELEDDSCLLSQLSLSSSAQVAQSQKETDNDQGHSKASSVVGEG 649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst6g00796 649 ProSiteProfiles WW/rsp5/WWP domain profile. 399 426 IPR001202 GO:0005515
Arst6g00796 649 Gene3D - 66 164 IPR012677 -
Arst6g00796 649 MobiDBLite consensus disorder prediction 609 633 - -
Arst6g00796 649 Pfam WW domain 398 424 IPR001202 GO:0005515
Arst6g00796 649 SUPERFAMILY RNA-binding domain, RBD 41 166 IPR035979 GO:0003676
Arst6g00796 649 PANTHER RNA BINDING PROTEIN 39 509 - -
Arst6g00796 649 SUPERFAMILY RNA-binding domain, RBD 177 264 IPR035979 GO:0003676
Arst6g00796 649 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 77 158 IPR000504 GO:0003723
Arst6g00796 649 CDD WW 397 426 IPR001202 GO:0005515
Arst6g00796 649 SMART ww_5 394 426 IPR001202 GO:0005515
Arst6g00796 649 MobiDBLite consensus disorder prediction 434 458 - -
Arst6g00796 649 MobiDBLite consensus disorder prediction 357 393 - -
Arst6g00796 649 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 183 257 IPR000504 GO:0003723
Arst6g00796 649 SMART rrm1_1 184 253 IPR000504 GO:0003723
Arst6g00796 649 SMART rrm1_1 78 154 IPR000504 GO:0003723
Arst6g00796 649 MobiDBLite consensus disorder prediction 1 70 - -
Arst6g00796 649 MobiDBLite consensus disorder prediction 484 649 - -
Arst6g00796 649 SUPERFAMILY WW domain 399 429 IPR036020 GO:0005515
Arst6g00796 649 MobiDBLite consensus disorder prediction 357 383 - -
Arst6g00796 649 Gene3D - 383 453 - -
Arst6g00796 649 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 185 242 IPR000504 GO:0003723
Arst6g00796 649 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 79 144 IPR000504 GO:0003723
Arst6g00796 649 MobiDBLite consensus disorder prediction 1 50 - -
Arst6g00796 649 Gene3D - 170 263 IPR012677 -
Arst6g00796 649 MobiDBLite consensus disorder prediction 484 608 - -
Arst6g00796 649 Coils Coil 591 611 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst6g00796 Arst-Chr6 7137017 7143413 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst6g00796 79 258 Eukaryotic Initiation Factors Gene Family AT1G71770 27.461 3.07e-09 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst6g00796 K13207 - gmx:100776162 580.096
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst6g00796 6 7137017 7143413 Arst6g00796 6 7137017 7143413 ECH