LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Arst6g00781	ATGGAAGCTAATAAGAAGAATAAGGTAAAGAAATTAGGATCAGGCAGTATAGAAGAAGAAGAAGAGGAGAATGATAAAGGTATGATAAGAAAAGGTCCATGGAGCGTTGAAGAAGACGTGATTCTGAGCAATTACGTGGCCACTCACGGTCATGGTCGCTGGAACACCCTCGCCCGTTCTGCAGGACTTAAGAGGTCCGGGAAAAGTTGCAGGTTGAGATGGCTAAACTATCTTCGTCCTGATGTTCGCCGCGGAAACATCACACTCCACGAACAAATCACCATTCTTGATCTTCATTCACGCTGGGGAAATAGATGGTCGAAAATTGCGGAGCACTTGCCAGGAAGAACGGACAATGAGATAAAGAATTATTGGAGGACCAGAGTGAGTAAGCAGGCAAGGCAACTCAACTGTGACGTCAATAGCAAAATATTCAGGGACGCTTTGCGTTATGTTTGGATGCCTCTTTTGCAAGAGCGACTTCAATCGAACACGCAAATGGAGCATCCAAACGCAGCACAAACCTACTCCTCGGACTCATCATCATCAGCATCCCTTGGCATACAACAATTCTGTTCTGAATCTGATCAACAAGTGATGAGTAATCATGGTGTTTTGGTGCATAGTATTGTTGAAGATGAGCCCGGAATATGCCCGAGTATGAATAACGAAACGTTTGAATATACCAATATACCCTTGGGGGATAGTGGGGACTTAATGCTGGAGAGTTTGTGCAACAACGATGACAACATATATGGCTTCTGTCACGACTTTGTCATGACCTTGGAATAA	792	0.4419	MEANKKNKVKKLGSGSIEEEEEENDKGMIRKGPWSVEEDVILSNYVATHGHGRWNTLARSAGLKRSGKSCRLRWLNYLRPDVRRGNITLHEQITILDLHSRWGNRWSKIAEHLPGRTDNEIKNYWRTRVSKQARQLNCDVNSKIFRDALRYVWMPLLQERLQSNTQMEHPNAAQTYSSDSSSSASLGIQQFCSESDQQVMSNHGVLVHSIVEDEPGICPSMNNETFEYTNIPLGDSGDLMLESLCNNDDNIYGFCHDFVMTLE	263

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Arst6g00781	263	SUPERFAMILY	Homeodomain-like	30	125	IPR009057	-
	Arst6g00781	263	Gene3D	-	88	132	-	-
	Arst6g00781	263	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	26	78	IPR017930	-
	Arst6g00781	263	MobiDBLite	consensus disorder prediction	1	29	-	-
	Arst6g00781	263	CDD	SANT	88	127	IPR001005	-
	Arst6g00781	263	ProSiteProfiles	Myb-like domain profile.	26	78	IPR001005	-
	Arst6g00781	263	FunFam	Myb transcription factor	31	83	-	-
	Arst6g00781	263	SMART	sant	30	80	IPR001005	-
	Arst6g00781	263	SMART	sant	83	131	IPR001005	-
	Arst6g00781	263	FunFam	MYB transcription factor	88	151	-	-
	Arst6g00781	263	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	79	133	IPR017930	-
	Arst6g00781	263	Gene3D	-	31	83	-	-
	Arst6g00781	263	Pfam	Myb-like DNA-binding domain	84	127	IPR001005	-
	Arst6g00781	263	Pfam	Myb-like DNA-binding domain	31	78	IPR001005	-
	Arst6g00781	263	CDD	SANT	33	78	IPR001005	-
	Arst6g00781	263	ProSiteProfiles	Myb-like domain profile.	79	129	IPR001005	-
	Arst6g00781	263	PANTHER	MYB TRANSCRIPTION FACTOR-RELATED-RELATED	28	189	IPR044676	GO:0003700\|GO:0006355\|GO:0043565

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Arst6g00781	Arst-Chr6	6994191	6995837	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Arst6g00781	10	200	MYB Transcription Factor Family	AT2G47190	55.838	1.52e-73	224

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Arst6g00781		Myb_DNA-binding	4.7e-14	CL0123