Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Arst6g00712 | ATGGCTTCTTCATTTTCAATGCAGTTGACCCATACCCACAACCGTCTTCCATGGTTTCGCCATATCCAGGGTAATTATAGCCAAGATGTGGCTAAGGTTCTTAGGCCTAGTATGGTAGGTAGCAGTAGCGGATTACAGCTTGGTCATAGCAAAGGATTGGCATCAAGATCACATTATGCCCTAAGGTTTTCTGTTTTGCAACAATCCGATCCAAAATCGATCAGATATAGGACCATGGTCTGTGTCAATGCTACAGAAAACAATGTTGTAGAGCTGCAAGCCAAAGTGACAAACAAGTGCTACTTTGATGTAGAAGTTGGGGGTGAACCTGTCGGCAGGATTGTTTTGGGCCTATTTGGAGAGATCGCTCCTAAAACAGTTGAGAACTTCCGTGCTTTGTGCACAGGAGAGAAAGGATATGGCTACAAAGGATGCTCCTTCCATCGTATAATCAAAGAATTCATGATTCAAGGAGGGGATTTTACTGAAGGAGATGGAACTGGTGGAATTAGCATCTATGGTCCCAGTTTTAAAGATGAGAGTTTTGCCTTGAAGCATGTTGGTCCTGGGGTTTTGAGCATGGCAAATGCTGGTCCTAACACCAATAGTAGTCAATTTTTTATCTGCACGACTCCTTGGCTAGACAATCGTCACGTGGTGTTTGGACACGTCATTGATGGAATGGATGTTGTGAAGACACTTGAATCCCAAGAGACAAGCAGAATGGATATCCCTCGGAAGCCTTGCAGAATTGTTAACTGCGGTGAGCTTCCTTTAGATAGTTGA | 786 | 0.4377 | MASSFSMQLTHTHNRLPWFRHIQGNYSQDVAKVLRPSMVGSSSGLQLGHSKGLASRSHYALRFSVLQQSDPKSIRYRTMVCVNATENNVVELQAKVTNKCYFDVEVGGEPVGRIVLGLFGEIAPKTVENFRALCTGEKGYGYKGCSFHRIIKEFMIQGGDFTEGDGTGGISIYGPSFKDESFALKHVGPGVLSMANAGPNTNSSQFFICTTPWLDNRHVVFGHVIDGMDVVKTLESQETSRMDIPRKPCRIVNCGELPLDS | 261 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Arst6g00712 | 261 | CDD | cyclophilin_ABH_like | 99 | 255 | - | - | |
| Arst6g00712 | 261 | PANTHER | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE | 99 | 257 | - | - | |
| Arst6g00712 | 261 | ProSiteProfiles | Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. | 101 | 256 | IPR002130 | GO:0000413|GO:0003755 | |
| Arst6g00712 | 261 | FunFam | Peptidyl-prolyl cis-trans isomerase | 85 | 261 | - | - | |
| Arst6g00712 | 261 | SUPERFAMILY | Cyclophilin-like | 94 | 257 | IPR029000 | - | |
| Arst6g00712 | 261 | ProSitePatterns | Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. | 142 | 159 | IPR020892 | GO:0003755|GO:0006457 | |
| Arst6g00712 | 261 | Pfam | Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD | 102 | 255 | IPR002130 | GO:0000413|GO:0003755 | |
| Arst6g00712 | 261 | Gene3D | - | 86 | 260 | IPR029000 | - | |
| Arst6g00712 | 261 | PRINTS | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 147 | 159 | IPR002130 | GO:0000413|GO:0003755 | |
| Arst6g00712 | 261 | PRINTS | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 190 | 205 | IPR002130 | GO:0000413|GO:0003755 | |
| Arst6g00712 | 261 | PRINTS | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 118 | 133 | IPR002130 | GO:0000413|GO:0003755 | |
| Arst6g00712 | 261 | PRINTS | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 205 | 217 | IPR002130 | GO:0000413|GO:0003755 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Arst6g00712 | Arst-Chr6 | 6381257 | 6383987 | Dispersed/Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Arst6g00712 | 49 | 254 | U-box Gene Family | AT5G67530 | 37.799 | 4.24e-30 | 116 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Arst6g00712 | K03768 | - | gmx:100785805 | 400.979 |