Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst6g00704 ATGAAAACATTCTGCTTTTTATTACTGTGTTTAGTGTTATTCATTGCACAACATAGAGTTGAATGTGAAATGTGGCAGAAAGCTCATGCAACTTTCTATGGTGGAGCCGATGCCTCAGGAACAATGGGTGGTGCATGTGGCTATGGGAATCTGTACAGAGACGGTTACGGTACGAAGACGACGGCTCTGAGTACCGTTCTGTTTAACGACGGGAAGGCATGCGGCGGTTGCTATCAGATAGTTTGTGATGCAAGCCAAGTGCCGCAATGGTGCCTTAAGGGCACTTTCATCACAGTTACTGCCACAAACTTTTGTCCTCCAAACTATGCACTCCCTAATGACAATGGCGGTTGGTGTAATCCTCCAAGACCACACTTCGACATGTCTCAACCTTCCTTTCTAACCATCGCCAAATACAAGGCCGGCATCGTACCCATACTGTACAGAAAAGTTGGGTGTAGAAGGAGTGGAGGAATAAGATTTAGCATCAATGGAAGGGATTATTTCGAATTAGTGACGATAAGCAATGTAGGTGGAGTTGGGGAGATAGGGCAAGTGTGGGTAAAAGGGTCAAAGAAGAATGTGTGGGAAGAAATGAGCAGGAACTGGGGTGTTAACTGGCAAAGTTTAAGCTATCTCAATGGACAGAGCTTGTCCTTCACAGTTCAACTCACCGATGGAAGAACCCTCACTGCTTATAACGTAGCACCCTCCAATTGGAAATTTGGCCAATCTTTCATCTCCAATATTCAGTTCAACTAA 762 0.4488 MKTFCFLLLCLVLFIAQHRVECEMWQKAHATFYGGADASGTMGGACGYGNLYRDGYGTKTTALSTVLFNDGKACGGCYQIVCDASQVPQWCLKGTFITVTATNFCPPNYALPNDNGGWCNPPRPHFDMSQPSFLTIAKYKAGIVPILYRKVGCRRSGGIRFSINGRDYFELVTISNVGGVGEIGQVWVKGSKKNVWEEMSRNWGVNWQSLSYLNGQSLSFTVQLTDGRTLTAYNVAPSNWKFGQSFISNIQFN 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst6g00704 253 FunFam Expansin 158 252 - -
Arst6g00704 253 Gene3D - 158 253 IPR036749 -
Arst6g00704 253 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 168 248 IPR007117 -
Arst6g00704 253 PANTHER EXPANSIN-A15 6 248 IPR002963 GO:0009664
Arst6g00704 253 SUPERFAMILY Barwin-like endoglucanases 8 176 IPR036908 -
Arst6g00704 253 SUPERFAMILY PHL pollen allergen 155 248 IPR036749 -
Arst6g00704 253 PRINTS Expansin/Lol pI family signature 24 39 IPR007118 GO:0005576
Arst6g00704 253 PRINTS Expansin/Lol pI family signature 196 210 IPR007118 GO:0005576
Arst6g00704 253 PRINTS Expansin/Lol pI family signature 141 157 IPR007118 GO:0005576
Arst6g00704 253 PRINTS Expansin/Lol pI family signature 234 248 IPR007118 GO:0005576
Arst6g00704 253 PRINTS Expansin/Lol pI family signature 42 60 IPR007118 GO:0005576
Arst6g00704 253 PRINTS Expansin/Lol pI family signature 64 82 IPR007118 GO:0005576
Arst6g00704 253 SMART dpbb_1 60 148 IPR007112 -
Arst6g00704 253 Pfam Expansin C-terminal domain 159 237 IPR007117 -
Arst6g00704 253 CDD DPBB_EXPA_N 25 153 - -
Arst6g00704 253 Gene3D - 14 154 IPR036908 -
Arst6g00704 253 PRINTS Expansin signature 234 250 IPR002963 GO:0009664
Arst6g00704 253 PRINTS Expansin signature 157 169 IPR002963 GO:0009664
Arst6g00704 253 PRINTS Expansin signature 97 107 IPR002963 GO:0009664
Arst6g00704 253 PRINTS Expansin signature 116 133 IPR002963 GO:0009664
Arst6g00704 253 PRINTS Expansin signature 84 95 IPR002963 GO:0009664
Arst6g00704 253 PRINTS Expansin signature 133 146 IPR002963 GO:0009664
Arst6g00704 253 PRINTS Expansin signature 55 69 IPR002963 GO:0009664
Arst6g00704 253 PRINTS Expansin signature 169 190 IPR002963 GO:0009664
Arst6g00704 253 PRINTS Expansin signature 205 226 IPR002963 GO:0009664
Arst6g00704 253 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 43 158 IPR007112 -
Arst6g00704 253 Pfam Lytic transglycolase 60 148 IPR009009 -
Arst6g00704 253 FunFam Expansin 15 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst6g00704 Arst-Chr6 6287487 6288772 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst6g00704 2 252 Expansin Gene Family AT4G01630 71.937 4.34e-139 389
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst6g00704 - - gmx:100813434 435.261