Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst6g00703 ATGAAAACATTCTGCTTTTTATTATTGTGTTTGGTGTTATTCATTGCACAACATAGAGTTAAATGTGCACCATGGCAGAAAGCTCATGCAACTTTCTACGATGGAGCCGATGCCTCAGGAACAATGGGTGGTGCATGTGGCTATGGGAATCTGTACACAGACGGTTACGGTACGAAGACGGCGGCTCTGAGCACCGCTCTGTTTAACGACGGGAAGGCATGCGGCGGTTGCTATCAGATAGTTTGCGATGCAAGCCAAGTGCCGCAATGGTGCCTTAAGGGCACTTTCATCACAGTTACTGCCACAAACTTTTGTCCTCCAAACTATGCACTCCCTAATGACAATGGCGGTTGGTGTAATCCTCCAAGACCACACTTCGACATGTCTCAACCTTCCTTTCTAACCATTGCCAAATACAAGGCCGGCATCGTACCCATACTGTACAGAAAAGTTGGGTGCAAAAGGAGTGGAGGAATAAGATTTAGCATCAAAGGAAGGGATTATTTCGAATTAGTGACGATAAGCAATGTAGGTGGAGTTGGGGAGATAGGGCAAGTGTGGGTAAAAGGGTCAAAGAAGAATGTGTGGGAAGCAATGAGCAGGAACTGGGGTGTTAACTGGCAAAGTTTAAGCTATCTCAATGGACAGAGCTTGTCTTTCAAAGTTCAACTCACCAATGGAAGAACCCTCACTGCTTATAACGTAGCACCCTCCAATTGGAAATTTGGCCAATCTTTCACCTCTAATGTTCAGTTCAACTAA 762 0.4528 MKTFCFLLLCLVLFIAQHRVKCAPWQKAHATFYDGADASGTMGGACGYGNLYTDGYGTKTAALSTALFNDGKACGGCYQIVCDASQVPQWCLKGTFITVTATNFCPPNYALPNDNGGWCNPPRPHFDMSQPSFLTIAKYKAGIVPILYRKVGCKRSGGIRFSIKGRDYFELVTISNVGGVGEIGQVWVKGSKKNVWEAMSRNWGVNWQSLSYLNGQSLSFKVQLTNGRTLTAYNVAPSNWKFGQSFTSNVQFN 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst6g00703 253 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 43 158 IPR007112 -
Arst6g00703 253 SUPERFAMILY PHL pollen allergen 155 248 IPR036749 -
Arst6g00703 253 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 168 248 IPR007117 -
Arst6g00703 253 PRINTS Expansin/Lol pI family signature 24 39 IPR007118 GO:0005576
Arst6g00703 253 PRINTS Expansin/Lol pI family signature 234 248 IPR007118 GO:0005576
Arst6g00703 253 PRINTS Expansin/Lol pI family signature 42 60 IPR007118 GO:0005576
Arst6g00703 253 PRINTS Expansin/Lol pI family signature 64 82 IPR007118 GO:0005576
Arst6g00703 253 PRINTS Expansin/Lol pI family signature 196 210 IPR007118 GO:0005576
Arst6g00703 253 PRINTS Expansin/Lol pI family signature 141 157 IPR007118 GO:0005576
Arst6g00703 253 FunFam Expansin 15 154 - -
Arst6g00703 253 CDD DPBB_EXPA_N 24 153 - -
Arst6g00703 253 Gene3D - 158 253 IPR036749 -
Arst6g00703 253 PANTHER EXPANSIN-A15 6 249 IPR002963 GO:0009664
Arst6g00703 253 SMART dpbb_1 60 148 IPR007112 -
Arst6g00703 253 PRINTS Expansin signature 97 107 IPR002963 GO:0009664
Arst6g00703 253 PRINTS Expansin signature 116 133 IPR002963 GO:0009664
Arst6g00703 253 PRINTS Expansin signature 84 95 IPR002963 GO:0009664
Arst6g00703 253 PRINTS Expansin signature 133 146 IPR002963 GO:0009664
Arst6g00703 253 PRINTS Expansin signature 157 169 IPR002963 GO:0009664
Arst6g00703 253 PRINTS Expansin signature 55 69 IPR002963 GO:0009664
Arst6g00703 253 PRINTS Expansin signature 169 190 IPR002963 GO:0009664
Arst6g00703 253 PRINTS Expansin signature 234 250 IPR002963 GO:0009664
Arst6g00703 253 PRINTS Expansin signature 205 226 IPR002963 GO:0009664
Arst6g00703 253 SUPERFAMILY Barwin-like endoglucanases 9 176 IPR036908 -
Arst6g00703 253 Pfam Lytic transglycolase 60 148 IPR009009 -
Arst6g00703 253 Pfam Expansin C-terminal domain 159 237 IPR007117 -
Arst6g00703 253 Gene3D - 14 154 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst6g00703 Arst-Chr6 6280235 6281383 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst6g00703 3 252 Expansin Gene Family AT4G01630 73.228 7.20e-140 391
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst6g00703 - - gmx:100813434 438.728
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst6g00703 6 6280235 6281383 Arst6g00703 6 6280235 6281383 ECH
Arst6g00703 6 6280235 6281383 Arst9g01433 9 20415731 20417925 PCT