Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst6g00694 ATGGCTTCTTTGATTGGAGTTTCTTCCATATACCAAACTCCCTCTACAACTCTCGAACTACACAAACGACCACCGCTTACTACTACTTCTTCTTCTTCTTCCTCTCTTTCCTTGCAATGCTTGGACAGCAAGTCCCACTTCAACAACGTTCTCAGAGCACACCTTTCTACTAACAATGGCAAGGGAGGTTTTAAGCCCACTGTTAGTTTTGTTACTTCTGCCATTGCCACTCCAAATTCTTCGGTCCTCAGCGAAGAAGCATTCAAGGGGATAGGCAGCGGTGATGACTTTGCCGACGACGACGACTTTGCCGGCTTTGGCTCTGAAACCGAAGAGGGATCTTCTGCTGTTAGCTCTGAAGAACTCGACGTTTCCAAGCTTGGCCTTCCTTCGCGCCTCGTTGATACCCTTCACAAGCGTGGGATTTCGCATCTTTTCCCCATTCAGAGAGCGGTGTTGGTACCGGCATTGGAAGGTAGAGATATCATTGCTCGGGCAAAGACTGGGACTGGCAAGACACTAGCATTTGGGATTCCCATTATTAAAGGCCTTACTGAAGATGAACATTCAAGTTCTCTCAGGCGGTCTGGTCGTCTCCCCAGAGTGTTGGTTCTTGCTCCTACCAGGGAGCTAGCAAAGCAAGTAGAGAAGGAGATAAAGGAATCTGCACCTTATCTGAGCACAGTTTGTGTTTATGGGGGTGTTTCCTATGTTACTCAACAAAGTGCGCTTTCACGTGGAGTTGATGTAGTTGTTGGGACGCCTGGTAGAATAATTGACCTAATCAATGGGAACAGCCTTAGACTGAATGAAGTTCAGTACCTGGTCCTCGATGAAGCGGATCAGATGCTTGCTGTTGGGTTTGAGGAGGATGTGGAAGTAATATTGGAAAAGCTCCCATCAGAGAGGCAGAGCATGCTTTTTTCTGCAACTATGCCAAGTTGGGTAAAGAAATTGGCTCGAAAGTATTTGGACAATCCATTGACAATAGATCTGGTTGGGGATGAAGAAGAAAAGCTCGCAGAAGGGATAAAACTTTTTGCTATATCAGCAACTGCCACTTCAAAGCGAACAATTCTTTCCGATCTTATAAGTGTTTATGCTAAGGGTGGGAAGACTATAGTTTTTACGCAGACAAAAAGAGATGCTGATGAAGTATCATTGGCATTAACAAATAGTATAATGTCTGAAGCATTACATGGTGATATATCTCAGCATCAAAGAGAGAGAACATTGAATGGTTTTCGACAAGGAAAATTTACAGTTCTTGTTGCCACTGATGTTGCAGCCCGTGGACTTGATATTCCTAATGTTGATTTGATTATTCATTATGAGCTTCCCAATGATCCAGAGACTTTTGTGCATCGCTCTGGTCGTACTGGGCGTGCAGGGAAACAAGGTACTGCCATTCTTATGTACACCAGTAGCCAGAGGAGAACAGTTAGATCTCTAGAGCGTGATGTAGGCTGCAAATTTGAATTCATCAGTCCACCCGGTATACAAGAGATTTTGGAGGCATCTGCTGAGCAAGTTGTTGCCACGCTCAATAGGGTTCATCCCGAGTCTGTTGAGTTTTTTACACCGACTGCACAAAAATTGATTGAAGAACAGGGAACAAGTGCCCTTGCAGCTGCACTAGCACAAATGAGTGGATTCTCTCGTCCTCCATCGTCCCGATCTTTAATCAACCATGAACAGGGATGGGTTACATTGCAGTTGATCCGAGATTCAGATAGTAGAAGATACTTCTCTGCAAGATCAGTCACTGGGTTTCTGGCTGAGGTTTATTCTCCAGCTGCTGATGAAGTTGGAAAAATACATTTAATTGCAGATGAAAGGGTTCAAGGGGCTGTTTTCGATCTTCCAGAGGAAATTGCTAAAGAGTTACTTAACAGGGAGATACCACCTGGAAACACAATAACCAAGGTTACCAAGTTGCCTGCCTTGCAAGATGATGGACCACCAGGTGATTTCTATGGGAAGTTCTCTGACAGAGATCGTAGTAGCCGAAGAGGTTCAGGTTCTGGTTCTGGTTCTAGGGATCGGAGAGGCGGTTTTAGAAGCTCACGGGGATATGGAGGCCGAGACTCTGATGATGATTTTGGTGATTCATATAGGAGAGGCAGTAGAAGTAATAATAAAACTGGCAGTAGCTGGTCTCGAGCTGGAAGATTCAGTGGTGATGATTGGCCAATTGGCGGTAGACGACCATCAGGCAGATCTTCATCATCAGACAGAGGTGGTTTTGGAGGGTCCTGTTTTAATTGTGGGGAGTCTGGGCATCGAGCATCAGATTGTCCAAACAAGCGCAGCTTCTTTTAG 2322 0.4513 MASLIGVSSIYQTPSTTLELHKRPPLTTTSSSSSSLSLQCLDSKSHFNNVLRAHLSTNNGKGGFKPTVSFVTSAIATPNSSVLSEEAFKGIGSGDDFADDDDFAGFGSETEEGSSAVSSEELDVSKLGLPSRLVDTLHKRGISHLFPIQRAVLVPALEGRDIIARAKTGTGKTLAFGIPIIKGLTEDEHSSSLRRSGRLPRVLVLAPTRELAKQVEKEIKESAPYLSTVCVYGGVSYVTQQSALSRGVDVVVGTPGRIIDLINGNSLRLNEVQYLVLDEADQMLAVGFEEDVEVILEKLPSERQSMLFSATMPSWVKKLARKYLDNPLTIDLVGDEEEKLAEGIKLFAISATATSKRTILSDLISVYAKGGKTIVFTQTKRDADEVSLALTNSIMSEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKQGTAILMYTSSQRRTVRSLERDVGCKFEFISPPGIQEILEASAEQVVATLNRVHPESVEFFTPTAQKLIEEQGTSALAAALAQMSGFSRPPSSRSLINHEQGWVTLQLIRDSDSRRYFSARSVTGFLAEVYSPAADEVGKIHLIADERVQGAVFDLPEEIAKELLNREIPPGNTITKVTKLPALQDDGPPGDFYGKFSDRDRSSRRGSGSGSGSRDRRGGFRSSRGYGGRDSDDDFGDSYRRGSRSNNKTGSSWSRAGRFSGDDWPIGGRRPSGRSSSSDRGGFGGSCFNCGESGHRASDCPNKRSFF 773
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst6g00694 773 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 359 519 IPR001650 -
Arst6g00694 773 SMART ultradead3 141 347 IPR014001 -
Arst6g00694 773 SMART c2hcfinal6 752 768 IPR001878 GO:0003676|GO:0008270
Arst6g00694 773 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 109 713 - -
Arst6g00694 773 ProSiteProfiles Zinc finger CCHC-type profile. 753 768 IPR001878 GO:0003676|GO:0008270
Arst6g00694 773 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 200 485 IPR027417 -
Arst6g00694 773 CDD SF2_C_DEAD 344 473 - -
Arst6g00694 773 MobiDBLite consensus disorder prediction 102 121 - -
Arst6g00694 773 SUPERFAMILY Retrovirus zinc finger-like domains 734 771 IPR036875 GO:0003676|GO:0008270
Arst6g00694 773 Pfam Zinc knuckle 752 768 IPR001878 GO:0003676|GO:0008270
Arst6g00694 773 Gene3D - 106 333 IPR027417 -
Arst6g00694 773 Gene3D - 743 771 - -
Arst6g00694 773 FunFam ATP-dependent RNA helicase RhlE 114 333 - -
Arst6g00694 773 MobiDBLite consensus disorder prediction 708 722 - -
Arst6g00694 773 Gene3D - 348 551 IPR027417 -
Arst6g00694 773 CDD GUCT_Hera 558 630 - -
Arst6g00694 773 Pfam GUCT (NUC152) domain 551 650 IPR012562 GO:0003723|GO:0004386|GO:0005524
Arst6g00694 773 FunFam Nucleolar RNA helicase II 352 542 - -
Arst6g00694 773 Pfam Helicase conserved C-terminal domain 357 464 IPR001650 -
Arst6g00694 773 CDD DEADc 133 331 - -
Arst6g00694 773 SMART helicmild6 384 464 IPR001650 -
Arst6g00694 773 MobiDBLite consensus disorder prediction 683 707 - -
Arst6g00694 773 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 153 330 IPR014001 -
Arst6g00694 773 Pfam DEAD/DEAH box helicase 146 319 IPR011545 GO:0003676|GO:0005524
Arst6g00694 773 MobiDBLite consensus disorder prediction 637 749 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst6g00694 Arst-Chr6 6162464 6167530 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst6g00694 104 486 Eukaryotic Initiation Factors Gene Family AT1G72730 37.405 6.58e-66 223
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst6g00694 6 6162464 6167530 Arst6g00694 6 6162464 6167530 ECH
Arst6g00694 6 6162464 6167530 Arst6g00694 6 6162464 6167530 PCT