Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst6g00681 ATGATGCCTTTGCATGAGTTGTACCGCAAGGCCAAGGAGAAGCTTGATTGTTCTAAAGAGATCAATAGCACAAGTGCAACTGATCATTCAACCGCACCAGAGAGTGATTTCTATGAACTTGTTTGGGAAAATGGTCAGATTTCAATGCAGGGTCAGTCAAGTAGTAGAGGTAGAAAGAGTCCAACTTGTAAGAGTTTAACATCTCATTGTCCCAAGGGTCTTCAACATAGGGATGTAGTGGGATATGGTAATGGTACCAATAATGTTAATATGATGAGGATGGGGAAGTTTGGGGATTCAGAAAGTGGACTGAATGAGATTAGAATGCCGGCTCCATCTGCTGAAGACGAAGACGTGATACATTGGTTGAATTATGGAATGGATGAATCTTTGCCACATGACTATGGTTCTGATTTCATACATGAACTCTCTGGGGTCACCATGCATGAAATCCCTCCCTTAAATAACCTCTCTTTGTTGGACAAAAGAAGCAATTCCAATCAGTTACTTAGGGACTCTCACAAGAACTATGCACGCCATGCTTTTGGTTCAGAACAAGGGATCCTTAACAAGGACTTTTCGGTTATGGCTAAAGGAGAGATTGAGATCCCTAGACCCAAACCTAGTACAAGTCAATTTTGCCAACCATCATCATATCAATGTCAAGGATCATTTGCATCTGTTAGGTCCAAAGCATCAGAGATAACAGAGAATAATGGTAGTAACCCTACTCATCAAGTACCTTGTGGGGAACTGGCTCAGATTTTCCCATCTGCTTCAAGTGGTTTTTCTGGGTTAAAGTTGGATAAGCAAGATCAGGTTATGTGCAGCAGTAGTTCCACTATAATGAACTTCTCCCATTTCGCTAGACCTGCTGCTATTGTGAAGGCTAATCTTCAGAACATTGGGTTGTCTTCATCAAGATCAGATGGTATTGAAAACAAAAATAACGATGCTTCTGCGACCGCAAGCAATCCTCCTGAATTAACAAAAGCTGGTTTTAGTGGCGAACATCCGAAACAATCCGCTGTGCACGAGCTGAAGATTGTGGAGCCTTCTAAGGCTGATTTGAAGCAATTGGAGCCCTCTAAGGCTGATTTGAAGCAATTGGAGCCAAAATCTCTTGAAGTGAATGCTACTGTTTTGAGGCAATCTGATCCTGCTCGAAAAGAAGATGTGTCAAAGATTTATCAAAGTTCCAATCTACTTCTTTGTGAAAGTACCAATAAAGGAGAGGAAGCTGTTGTAAAAAATATGGAGCCTGCAGTAGCCTCTTCATCCATTTGCTCTGGCAATGGCGCAGAGAGAATTTCGGGCAACCCAAACCAAAGTTTGAAGCGAAAAAGACAAGAAACAGAGGACTCTGAGTGCCACAGTGAAGATGTTGAGGAAGAATCAGTGGGTGTTAAAAAGGCAGGTCCAACACGAGGTGTTAAGAGAAGTCGTTCAGCTGAAGTGCATAATCTATCTGAAAGGAGGCGAAGAGACAGGATCAATGAGAAGATGCGTGCATTGCAAGATCTCATACCAAACTGCAATAAGGTGGACAAAGCTTCAATGCTGGACGAGGCAATCGAGTATCTCAAAACACTTCAACTCCAAGTTCAAATTATGTCAATGGGAGCTGGTTTGTATATGCCTCCAATGGGTATGCCTGACATGAATGGTGGACCTTCTAGATTCCCAATGATTCAGGTGCCCCAAATGCACAGAACTCATCCTCCGGCCGCACCTATGCCCGGACCCTCTGCATTACATGGGATGGGAAGATCAAATCCTCCAGTGTTTGGCCTGCCTAGCCAGGGACTTCCAATTCCAACTATGCCGCGTGCTCCAATGTTTTCTTATCCAGGAGAGCCTGTTGCAAACTCACCAGCCTTACAACCAAATGCTTGTGGAACAGCAGGACTTACGGAAACTGAGAATCCAGCTTCAGCATCTAACCAAAAGGATCCAATGCCAATTATGCAGAACACCAATGGTTGTAACTCGACGAGTCAGACTACAAAACAGTGTGAAGCAGCAGCAGCTGGCAGGATTGAACCCTCTGCCTCTCAGGCTAACGACGGCAGAGCTGTGGATGCCACGAGAAAAGATAACCTTGTGACTGATAAATTCGACTAG 2124 0.4388 MMPLHELYRKAKEKLDCSKEINSTSATDHSTAPESDFYELVWENGQISMQGQSSSRGRKSPTCKSLTSHCPKGLQHRDVVGYGNGTNNVNMMRMGKFGDSESGLNEIRMPAPSAEDEDVIHWLNYGMDESLPHDYGSDFIHELSGVTMHEIPPLNNLSLLDKRSNSNQLLRDSHKNYARHAFGSEQGILNKDFSVMAKGEIEIPRPKPSTSQFCQPSSYQCQGSFASVRSKASEITENNGSNPTHQVPCGELAQIFPSASSGFSGLKLDKQDQVMCSSSSTIMNFSHFARPAAIVKANLQNIGLSSSRSDGIENKNNDASATASNPPELTKAGFSGEHPKQSAVHELKIVEPSKADLKQLEPSKADLKQLEPKSLEVNATVLRQSDPARKEDVSKIYQSSNLLLCESTNKGEEAVVKNMEPAVASSSICSGNGAERISGNPNQSLKRKRQETEDSECHSEDVEEESVGVKKAGPTRGVKRSRSAEVHNLSERRRRDRINEKMRALQDLIPNCNKVDKASMLDEAIEYLKTLQLQVQIMSMGAGLYMPPXMGMPDMNGGPSRFPMIQVPQMHRTHPPAAPMPGPSALHGMGRSNPPVFGLPSQGLPIPTMPRAPMFSYPGEPVANSPALQPNACGTAGLTETENPASASNQKDPMPIMQNTNGCNSTSQTTKQCEAAAAGRIEPSASQANDGRAVDATRKDNLVTDKFD 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst6g00681 708 MobiDBLite consensus disorder prediction 617 708 - -
Arst6g00681 708 MobiDBLite consensus disorder prediction 628 674 - -
Arst6g00681 708 MobiDBLite consensus disorder prediction 426 488 - -
Arst6g00681 708 MobiDBLite consensus disorder prediction 305 344 - -
Arst6g00681 708 CDD bHLH_AtPIF_like 482 544 IPR047265 -
Arst6g00681 708 MobiDBLite consensus disorder prediction 305 329 - -
Arst6g00681 708 Coils Coil 445 465 - -
Arst6g00681 708 MobiDBLite consensus disorder prediction 446 470 - -
Arst6g00681 708 Gene3D - 478 540 IPR036638 GO:0046983
Arst6g00681 708 MobiDBLite consensus disorder prediction 48 70 - -
Arst6g00681 708 MobiDBLite consensus disorder prediction 693 708 - -
Arst6g00681 708 MobiDBLite consensus disorder prediction 571 605 - -
Arst6g00681 708 PANTHER TRANSCRIPTION FACTOR PIF3 550 668 IPR044273 GO:0003700|GO:0006355
Arst6g00681 708 FunFam Basic helix-loop-helix transcription factor 477 540 - -
Arst6g00681 708 SMART finulus 488 537 IPR011598 GO:0046983
Arst6g00681 708 MobiDBLite consensus disorder prediction 48 69 - -
Arst6g00681 708 Pfam Helix-loop-helix DNA-binding domain 486 532 IPR011598 GO:0046983
Arst6g00681 708 MobiDBLite consensus disorder prediction 426 445 - -
Arst6g00681 708 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 482 531 IPR011598 GO:0046983
Arst6g00681 708 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 481 541 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst6g00681 Arst-Chr6 6036386 6040813 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst6g00681 2 553 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 32.979 1.78e-59 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Arst6g00681 HLH 5.4e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst6g00681 K12126 - gmx:100794974 675.241