Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst6g00618 ATGGTAAGGGGAGGAAAAATTAGTGGCAAAAGCAGCTTTAGGAATAGGGCTCGGTCAAAGGAAGGTGGTTCCGATGATTCCGATGAAGATTATGTGGTTTCAGATGAAGATGAAGAAGTGTCCGATTGTCCGGACGAATATAGCTCCTCTCTAGATGGATGTGCAACAGAGGAGAGTTATGATGCTTTTATAGACGAGGAGGAAGAAGATGATGGAATTCAACAAGTGAAGAAATTCAATAGATCAGAGGCCAGGAATGGTGTTTGTGGCCGACAGAAAAATGCAAGTAAAAGCAGACGAAAGAGGGGAAGGATTGCATATGCAAAACATGAAGATCAAGAAGCACAAGAAGAACAAGAACAAGAACAAGTAAAAGTAGAAGATGGGGATGGGGATGGGGATGGAGATGGAGATGGATGTGGAGGTGGAAGTAGGGAGAAGGAGGGTGAGGATGATGAGGATGAAGATGAGGATTTCAAATATGATGATTATGAGGAGGACAATGGCGATGACGACGACGATGAGGACTTTGATTTTGAAGATGATGATGAGGAATTTTCACTAGAGGAAGGAGATTACTTAGTAGAGGAAGAAGAATCAAGGGGAAGAAAGAAGAAAAATAACAACATGAAAGTGCGCAAGAAGATTTTGAAGAGAAAGGTTTCCGTGACTTCTACCAAACATCGAAAGAGGAAGAAATCTAGAGCTTCAAATAAACCCTTGAAAAAGAAAAGAAGGAATAGAGGGTTAAAGAGGAAAGTAAGATGTGATGATGTGGATGATTTTATTGATAATGGCCCAGCCAGCAGGACAAAAAGGAGGAAAGAATTGGGTAGGCCAAGGAGAATGCTTTTACCCGAGGATTCCAATTCCGATGCATATGGTGCCTCTTCTGGTTCATCTGATTTCGAGTTTACTATCTCCGAAGAAGAAAGAGAACAGGTCCGAGAAGCCCAAGAATTGTGTCAAAGCTCTAGAAGGAATTTGAGGAGTTCTTCCCATTTAACCAAAAATGAAGAGATTGAGTTACATGAAGATCGACACCAACTAAGGAAGCCTCATGGTCGAAAGGGTAAGGAAAAGATAGATGAATCTCAAGGAAGAAAGGGTAAGGAAAAGGTAGAGGATTTAAAAAATGAGTTGGGAAAGCAGGTGTGCGGAATTTGTTTGTCTGAGGAAAATAAAAGAAAAATAAGAGGAATTCTAAATTGTTGTACTCACTACTTTTGCTTTACCTGCATTGTGGAGTGGGCAAAAGTGGAAACTCGGTGTCCTTTGTGTAAGCAGAGATTCAGAACAATTACTAAGCCTGCCAGATCAACTGCAGGAGTTGATTTTAGAGAAGTGGTAGTAGAAGTGCCTGAACGCGACCAGGTTTACCAGCCCACCGAAGAAGAACTCAGGAGCTATATTGATCCATATGAGGATGTTATTTGTTCAGAGTGCCGTCAAGGTGGAGATGATGCCCTCATGTTACTATGTGATATCTGTGATTCCCCTGCACACACATATTGTGTTGGTTTGGGTCGGGAAGTACCTGAAGGTAATTGGTATTGTGATGGTTGCAGACCGGATGCTTTGGCATCTTCAAGCTCTCAAGTTCAAGAACGTCTGACTGATCCAAGTGTCCCAACTCAAAACTTGCCTGTTAGACCATCAATTGTTCTTAATGAACGAGAAAGTATAGACCTCAACATGATATCTTCACCCCGGGCATCTTTTAGTCAAGGATTTGGGCATATTTCATCTGCTAGAGTTTCTGGTAGAAGTGTTGAACTAGCTTCTCCAGGACCTGGAGGAGGGGCACCGACTTTATCAGAAAGGCGCTGGATACTCCGACAGATTCACCAGCTACGTTCGGTATCTGGCAGAACCAATGGTACTTCAGCTACCAATTCAACAAGTAACTTGTATAACTCTCAAACCGATCAAGGCAGGGAAACAAATGCAACACAGCATACAAGGGCACAGGATGCGGGAACATCGTACCTCCCATTCTTAGACGAGAGATTATGCAACAATATGTCTCCATCAATGCAGAATGCAGACCCCTCCTCAACGAGAATTGGCAATGCTAGAAGACCAGTGGTTCAGGATTCAGCTATGCTTGCCAACAGATCTATGCACGGTGTGCTATTGCCCGTACTTGTGGCAACAACACCTTCCGTATCTGGTTATGAACAAGTTTATCCGTTCAACAACAGCATAGACGTGGTCACTGACAATAGCTTACCCGTTGCTATCAAAGAAGAGAGTAACTTCGAAACAATAAAGCAGCAGTTGAAGTCTATGGTTAAAAGACACCTGTGGAGCTTATCTCGAGATGTTGATTTAGGGCATAATACTCTCAAGGACGTTGCAAGGAGTTCTAAACACACCGTACTAGCTGCATGTGGTCTTGAGCACAAGAAGAGTGAGGTTCGGTCTGTGCCCGCACCAGATGTCTGCCCCCACATTGAACTAATGGCAGGTGGACAAACTAGTTTGATAAGAGGTTGCTGCTCAACTTGCTTTGATTCTTTTGTAAAAAATGTGGTAAAAAATATTTTGGACAGAAGAATGTCCTCACAGTGGTTACGATTAGGTCTCTAG 2592 0.4282 MVRGGKISGKSSFRNRARSKEGGSDDSDEDYVVSDEDEEVSDCPDEYSSSLDGCATEESYDAFIDEEEEDDGIQQVKKFNRSEARNGVCGRQKNASKSRRKRGRIAYAKHEDQEAQEEQEQEQVKVEDGDGDGDGDGDGCGGGSREKEGEDDEDEDEDFKYDDYEEDNGDDDDDEDFDFEDDDEEFSLEEGDYLVEEEESRGRKKKNNNMKVRKKILKRKVSVTSTKHRKRKKSRASNKPLKKKRRNRGLKRKVRCDDVDDFIDNGPASRTKRRKELGRPRRMLLPEDSNSDAYGASSGSSDFEFTISEEEREQVREAQELCQSSRRNLRSSSHLTKNEEIELHEDRHQLRKPHGRKGKEKIDESQGRKGKEKVEDLKNELGKQVCGICLSEENKRKIRGILNCCTHYFCFTCIVEWAKVETRCPLCKQRFRTITKPARSTAGVDFREVVVEVPERDQVYQPTEEELRSYIDPYEDVICSECRQGGDDALMLLCDICDSPAHTYCVGLGREVPEGNWYCDGCRPDALASSSSQVQERLTDPSVPTQNLPVRPSIVLNERESIDLNMISSPRASFSQGFGHISSARVSGRSVELASPGPGGGAPTLSERRWILRQIHQLRSVSGRTNGTSATNSTSNLYNSQTDQGRETNATQHTRAQDAGTSYLPFLDERLCNNMSPSMQNADPSSTRIGNARRPVVQDSAMLANRSMHGVLLPVLVATTPSVSGYEQVYPFNNSIDVVTDNSLPVAIKEESNFETIKQQLKSMVKRHLWSLSRDVDLGHNTLKDVARSSKHTVLAACGLEHKKSEVRSVPAPDVCPHIELMAGGQTSLIRGCCSTCFDSFVKNVVKNILDRRMSSQWLRLGL 863
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst6g00618 863 MobiDBLite consensus disorder prediction 332 349 - -
Arst6g00618 863 MobiDBLite consensus disorder prediction 148 195 - -
Arst6g00618 863 Pfam PHD-finger 478 524 IPR019787 -
Arst6g00618 863 PANTHER F18C1.6 PROTEIN 1 853 - -
Arst6g00618 863 SUPERFAMILY RING/U-box 385 434 - -
Arst6g00618 863 MobiDBLite consensus disorder prediction 252 273 - -
Arst6g00618 863 Pfam Ring finger domain 385 428 IPR001841 -
Arst6g00618 863 SUPERFAMILY FYVE/PHD zinc finger 449 524 IPR011011 -
Arst6g00618 863 MobiDBLite consensus disorder prediction 28 45 - -
Arst6g00618 863 MobiDBLite consensus disorder prediction 321 374 - -
Arst6g00618 863 MobiDBLite consensus disorder prediction 356 374 - -
Arst6g00618 863 ProSiteProfiles Zinc finger RING-type profile. 386 428 IPR001841 -
Arst6g00618 863 SMART ring_2 386 427 IPR001841 -
Arst6g00618 863 ProSiteProfiles Zinc finger PHD-type profile. 476 525 IPR019787 -
Arst6g00618 863 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 362 449 IPR013083 -
Arst6g00618 863 CDD RING-HC_Topors 384 431 - -
Arst6g00618 863 MobiDBLite consensus disorder prediction 621 658 - -
Arst6g00618 863 MobiDBLite consensus disorder prediction 1 302 - -
Arst6g00618 863 Coils Coil 107 127 - -
Arst6g00618 863 Coils Coil 308 328 - -
Arst6g00618 863 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 465 543 IPR013083 -
Arst6g00618 863 MobiDBLite consensus disorder prediction 105 130 - -
Arst6g00618 863 ProSitePatterns Zinc finger RING-type signature. 405 414 IPR017907 -
Arst6g00618 863 MobiDBLite consensus disorder prediction 206 251 - -
Arst6g00618 863 SMART PHD_3 478 523 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst6g00618 Arst-Chr6 5441926 5445484 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst6g00618 473 522 C2H2 Transcription Factor Family AT3G01460 46.154 2.11e-08 56.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Arst6g00618 PHD 5.5e-09 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst6g00618 - - ahf:112695571 1464.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst6g00618 6 5441926 5445484 Arst6g00618 6 5441926 5445484 ECH