Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst6g00615 ATGGTAATGATGGATCTCAACAAGGAATGGGTGTGTGAGGAATTGAGTGAGAGCAAGAAGTGTTGTAGTGATTGCAAGACCACCAAGACTCCGCTGTGGAGAGGAGGACCTGCTGGTCCCAAGAGTCTTTGCAACGCGTGCGGAATAAGGTACCGGAAGAGAAGGGCTTCAGCGGTGGGAATGCGAAAAGGACAAGAGAGGAAGAGAGAGAGATCACAAAATGGCGGTAGCAGCAGCTCCTCTGATAACGAGTTGAAGGAGTCGTTGAAAGTGAATTTGATGGCGTTGGGTGAGGAGTTTTGGTTGCTAAAGAAGAAACAGAGGAGTATGTGTTTGTTGGGGGAAGAGGAACAAGCCGCTGTGTGTTTAATGGCACTCTCTTGTGGCTATGTTTTTGCTTAA 402 0.4801 MVMMDLNKEWVCEELSESKKCCSDCKTTKTPLWRGGPAGPKSLCNACGIRYRKRRASAVGMRKGQERKRERSQNGGSSSSSDNELKESLKVNLMALGEEFWLLKKKQRSMCLLGEEEQAAVCLMALSCGYVFA 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst6g00615 133 CDD ZnF_GATA 22 73 IPR000679 GO:0006355|GO:0043565
Arst6g00615 133 PANTHER OS01G0976800 PROTEIN 15 132 - -
Arst6g00615 133 SMART GATA_3 16 66 IPR000679 GO:0006355|GO:0043565
Arst6g00615 133 MobiDBLite consensus disorder prediction 56 85 - -
Arst6g00615 133 MobiDBLite consensus disorder prediction 59 73 - -
Arst6g00615 133 Gene3D - 17 80 IPR013088 GO:0006355|GO:0008270
Arst6g00615 133 Pfam GATA zinc finger 22 55 IPR000679 GO:0006355|GO:0043565
Arst6g00615 133 ProSitePatterns GATA-type zinc finger domain. 22 47 IPR000679 GO:0006355|GO:0043565
Arst6g00615 133 ProSiteProfiles GATA-type zinc finger domain profile. 16 52 IPR000679 GO:0006355|GO:0043565
Arst6g00615 133 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 19 55 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst6g00615 Arst-Chr6 5426518 5427498 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst6g00615 15 133 C2C2-Gata Transcription Factor Family AT5G49300 53.719 2.21e-31 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Arst6g00615 GATA 1.2e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst6g00615 - - qsa:O6P43_011056 151.754