LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Arst6g00606	ATGGCACCAAACAAGAGAGGATCATCAAGCGATGAGGGTAATGATGAGAGAGACCTTCAGCTCCCTCTTTGTAAACGAAAAGCAGCACTACCAGACACTCGTATTTCTGCTTCCGGTAGTGGTTCCACCAACATGGCGTTGATGTTGGAACCTGTAATTCGGAAAGTGTTACAGGAGATGATGCCACCTATGCTAGAACAGGTGATGCCACGTATGTTAGAACAGGTGATTCCACCTATACTGCAGCGTTACCTACCTTCCCCATGTGATGGATTATCGGTGAGGGGGCAGATTAGTCCAGCAGCTGGTAGAGGCAGATCATTGCAGTTATGTCTGATGAAAGGGTTGCCTGCAACCATTTTCACACAGATCAACATCACAGCAGAGGACAGTTCCCCGCTCCAGGTTGCGTTGTGTGATGCCACGATTCAGAACAGCAAGGTAACAAAGGGAGATGGTCCCTCCTTGAAGGTCCAGCTGTGTGTCCTGAAGGCTGATTTTGAAAGTGAGGATTGGACTGCTGAGGAATTCAATAAAAACATAGAAAGTCCAAGAGAAGGAAAAGGACCATTACTCAAGGGAGACACGGTTATTACCATGGAAAATGGAGTTGGCTTCTTCAAGAATGTTGAGTTTACTGATAACTCTTGCTGGACAAGAAGCGGCAAGTTCCGGCTTGGAATTAAGGTACTGTCATCGAATTCAGACATCAAGGAAGCAAGAAGCGAGCGTATAAGGGTGAAGGATAAGCGAGGAGTGGCAAATGAGAAACCGGATCGTCCTTCATTGGATGACAAGGTGAGTTGTCTGCATAAGATAGCGAAAAATGGTCCGATCCGCAAGCAGTTGTCCTCCAATGGAATCAAAACTGTGAAGGATCTGTTGCGCTTGCTCACAACTGACCAAGCTTCACTAAAACAGAAAACCGGCAACATTCCGGGGAAGTCATGGGAGAAGATTATTGAGCATGCCAAGTCTTGTGCCATAGATAATGATGAGCGCTACATCTATCAATATTTCACAGGAACAGCAGAGCAACCAATAGCAGCATCCCTTGTCTTAAATTGCATCTATGAGCCTGTGGCGATTTCATTTGATGGCCAAAACTTTTGCAGCCTAGAGTCTTTGAATTCGGAAGGCAAGCGTTGGGTGGAAACTGTAAAGCGGCAAGCATACAAGAACTTGAAGGATTTGAAGCCATTTGGCGCAAGTTCAGCGGGTCAATCTCTGGAAAACTTCGATTTCCCAGTTTCTCATCAGCAAGGGCAAGCACAAATGGTTCAAGCATCGGCATCGACAGCATCAGGCGCACAGAGTGTTAACGAGCAAGTAGGGTGTTCCAGTCAACATCAGGTGGGACGGGAAGAGTTCGTTGGCGATAGCGGATGGAGCAACATCAACATGGTTGATCCGTTTCCAAATTACTCGGACCCAGTTTACCCCTTTTACTATGTTGCAGGTGATTATGGGGCAACATCATCCAACGATTCATTCCCTGTCTTTGATATGCATTGGTCAAGCAAAGGTGGGTGCAACACTGTGTGGGCTAAAATCCGAACTGCTGTCATTCGTAATGTTCTTAAATGGACCATTCTCTATGCCGCCAAAAGGAAGCCCAAGCTTCTTGTTCCCTATCAGTAA	1641	0.4637	MAPNKRGSSSDEGNDERDLQLPLCKRKAALPDTRISASGSGSTNMALMLEPVIRKVLQEMMPPMLEQVMPRMLEQVIPPILQRYLPSPCDGLSVRGQISPAAGRGRSLQLCLMKGLPATIFTQINITAEDSSPLQVALCDATIQNSKVTKGDGPSLKVQLCVLKADFESEDWTAEEFNKNIESPREGKGPLLKGDTVITMENGVGFFKNVEFTDNSCWTRSGKFRLGIKVLSSNSDIKEARSERIRVKDKRGVANEKPDRPSLDDKVSCLHKIAKNGPIRKQLSSNGIKTVKDLLRLLTTDQASLKQKTGNIPGKSWEKIIEHAKSCAIDNDERYIYQYFTGTAEQPIAASLVLNCIYEPVAISFDGQNFCSLESLNSEGKRWVETVKRQAYKNLKDLKPFGASSAGQSLENFDFPVSHQQGQAQMVQASASTASGAQSVNEQVGCSSQHQVGREEFVGDSGWSNINMVDPFPNYSDPVYPFYYVAGDYGATSSNDSFPVFDMHWSSKGGCNTVWAKIRTAVIRNVLKWTILYAAKRKPKLLVPYQ	546

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Arst6g00606	546	Pfam	Calmodulin binding protein central domain	262	327	IPR046830	-
	Arst6g00606	546	Pfam	Calmodulin binding protein-like N-terminal domain	108	250	IPR046831	-
	Arst6g00606	546	PANTHER	OS02G0177800 PROTEIN	44	444	IPR012416	GO:0005516
	Arst6g00606	546	Pfam	Calmodulin binding protein C-terminal domain	351	400	IPR046829	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Arst6g00606	Arst-Chr6	5355832	5358599	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Arst6g00606	47	443	Calmodulin-binding Proteins	AT5G26920	35.309	4.90e-63	211

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Arst6g00606	-		-	aip:107645943	986.097