Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst6g00590 ATGTCTCTGCGACCGAGTGCCAACTCTCGCTCGGAGACGAGGAAGAAGTCCTACAAGATCGGCGTCGACGCCGACGAGGCTCGTCGCCGGAGGGAGGACAACCTGGTCGAGATCAGGAAGAACAAGCGCGAGGACAGTCTTCTTAAGAAACGAAGGGAGGGCCTTCTCCTTCACCCTCATTTGCCCAATAACAACAACAACCATGCCCCTTCTCCTTCCTTCCCCGCCAACCGGCAATTAGAAGCAACTACTCAGTTTAGAAAGCTATTATCAATTGAACGCAGCCCTCCAATTGATGAGGTCATTAAGGCAGGTGTTGTCCCTAGGTTTGTGGAGTTCTTGGGAAGGCATGATCTACCACAGTTGCAATTTGAGGCTGCATGGGCTCTAACAAATGTTGCATCTGGAACATCTGAGCACACAGGAGTTGTCATTAAACATGGTGCTGTTCCCCTGTTTGTGCAGCTTCTGAGCTCTGGCAGTGATGACGTTAGAGAACAGGCAGTATGGGCCTTGGGTAATGTTGCTGGTGACTCCCCAAACTGTAGGGATCTTGTTCTAAGTCATGGTGCACTCATGCCATTACTGTCTCAATTGAATCAACATTCTAAACCATCTATGTTGAGGAATGCTACATGGACTTTGTCTAATTTCTGCCGTGGAAAGCCTCCAACACCTTTTGAACAGGTAAAGCCTGCCTTGCCTGTTCTTCGGGAGCTCATTTACTTGAATGATGAAGAAGTTCTAACAGATGCGTGCTGGGCTCTATCTTACCTTTCAGATGGCCCAAATGAAAAAATTCAAGCTGTAATTGAAATAGGAGTATGCCCAAGACTTGTGGAGCTCTTGCTACATCCATCACCTACAGTTCTTATACCTGCTCTTCGAACTGTAGGAAATATTGTTACCGGTGACGATGCTCAGACTCAGTTTGTAATTGATAAAGGAGTTCTCCCCTGTCTTCACCAACTTCTTTCGCAAAATAACAAGAAAAACATCAGGAAAGAAGCTTGTTGGACGATATCAAATATCACAGCTGGGAATAGAATTCAAATACAGGCTGTCATTGAGGCCAACGTTATTCCTCCTCTTGTCAATCTTCTTCAGAATGCAGAATTTGAAATCAAGAAGGAAGCTGCATGGGCCATTTCCAATGCAACTTCTGGAGGATCGCATGAGCAGATTCAGTTCCTGGCAAATCAAGGTTGCATCAAGCCATTGTGTGATCTATTGACATGTCCCGACCCAAGGATTGTGACAGTTTGTCTTGAGGGGCTGGATAACATTTTAAAGGTTGGAGAAGCTGACAAGGAAATGGGACACAACGGCGGGATCAATGTTTTCGCTCAAATGGTTGACGAATGTGAAGGATTGGATAAGATTGAAAATCTGCAGACCCATGACAACAATGAGATTTATGAGAGGGCTGTGAAGATTTTGGAGAGATATTGGGCTGAGGATGAATTGGAAGTTGAGCAGAGTCAGAATGGCGGGGATGGTACTCAGCAAGGTTTTTCTTTTGGGACTAACCAGCCAACCCTCCCGCCAGGTGGTTTTAACTTCGGGTGA 1569 0.4602 MSLRPSANSRSETRKKSYKIGVDADEARRRREDNLVEIRKNKREDSLLKKRREGLLLHPHLPNNNNNHAPSPSFPANRLEGIPVMVQRVWSDDPAAQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDLPQLQFEAAWALTNVASGTSEHTGVVIKHGAVPLFVQLLSSGSDDVREQAVWALGNVAGDSPNCRDLVLSHGALMPLLSQLNQHSKPSMLRNATWTLSNFCRGKPPTPFEQVKPALPVLRELIYLNDEEVLTDACWALSYLSDGPNEKIQAVIEIGVCPRLVELLLHPSPTVLIPALRTVGNIVTGDDAQTQFVIDKGVLPCLHQLLSQNNKKNIRKEACWTISNITAGNRIQIQAVIEANVIPPLVNLLQNAEFEIKKEAAWAISNATSGGSHEQIQFLANQGCIKPLCDLLTCPDPRIVTVCLEGLDNILKVGEADKEMGHNGGINVFAQMVDECEGLDKIENLQTHDNNEIYERAVKILERYWAEDELEVEQSQNGGDGTQQGFSFGTNQPTLPPGGFNFG 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst6g00590 540 PANTHER IMPORTIN ALPHA 14 506 - -
Arst6g00590 540 Gene3D - 13 52 IPR036975 GO:0006606
Arst6g00590 540 Pfam Armadillo/beta-catenin-like repeat 369 405 IPR000225 GO:0005515
Arst6g00590 540 Pfam Armadillo/beta-catenin-like repeat 156 194 IPR000225 GO:0005515
Arst6g00590 540 Pfam Armadillo/beta-catenin-like repeat 282 320 IPR000225 GO:0005515
Arst6g00590 540 Pfam Armadillo/beta-catenin-like repeat 113 153 IPR000225 GO:0005515
Arst6g00590 540 Pfam Armadillo/beta-catenin-like repeat 251 278 IPR000225 GO:0005515
Arst6g00590 540 Pfam Armadillo/beta-catenin-like repeat 410 447 IPR000225 GO:0005515
Arst6g00590 540 Pfam Armadillo/beta-catenin-like repeat 197 238 IPR000225 GO:0005515
Arst6g00590 540 Pfam Armadillo/beta-catenin-like repeat 323 364 IPR000225 GO:0005515
Arst6g00590 540 MobiDBLite consensus disorder prediction 1 32 - -
Arst6g00590 540 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 123 166 IPR000225 GO:0005515
Arst6g00590 540 MobiDBLite consensus disorder prediction 9 32 - -
Arst6g00590 540 SUPERFAMILY ARM repeat 14 504 IPR016024 -
Arst6g00590 540 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 377 405 IPR000225 GO:0005515
Arst6g00590 540 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 334 366 IPR000225 GO:0005515
Arst6g00590 540 FunFam Importin subunit alpha 80 503 - -
Arst6g00590 540 PIRSF Importin_alpha 5 539 IPR024931 GO:0005737|GO:0006606|GO:0061608
Arst6g00590 540 MobiDBLite consensus disorder prediction 508 540 - -
Arst6g00590 540 Gene3D - 81 503 IPR011989 -
Arst6g00590 540 FunFam Importin subunit alpha 13 52 - -
Arst6g00590 540 ProSiteProfiles IBB domain profile. 1 60 IPR002652 GO:0006606|GO:0061608
Arst6g00590 540 MobiDBLite consensus disorder prediction 512 540 - -
Arst6g00590 540 Pfam Atypical Arm repeat 464 508 IPR032413 -
Arst6g00590 540 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 166 208 IPR000225 GO:0005515
Arst6g00590 540 SMART arm_5 112 153 IPR000225 GO:0005515
Arst6g00590 540 SMART arm_5 323 364 IPR000225 GO:0005515
Arst6g00590 540 SMART arm_5 409 449 IPR000225 GO:0005515
Arst6g00590 540 SMART arm_5 155 195 IPR000225 GO:0005515
Arst6g00590 540 SMART arm_5 196 238 IPR000225 GO:0005515
Arst6g00590 540 SMART arm_5 366 406 IPR000225 GO:0005515
Arst6g00590 540 SMART arm_5 281 321 IPR000225 GO:0005515
Arst6g00590 540 SMART arm_5 240 279 IPR000225 GO:0005515
Arst6g00590 540 Pfam Importin beta binding domain 14 102 IPR002652 GO:0006606|GO:0061608
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst6g00590 Arst-Chr6 5209842 5214608 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst6g00590 171 428 U-box Gene Family AT1G23030 25.385 4.79e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst6g00590 K15042 - aew:130779640 892.878
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst4g01326 4 14215101 14218618 Arst6g00590 6 5209842 5214608 ECH
Arst6g00590 6 5209842 5214608 Arst6g00590 6 5209842 5214608 ECH