Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst6g00544 ATGTATTCATCTCTCTCACAAACATGCTCGGATGTGAAAATGGTTCAATCACTTGTACCTATATGGGAGGAACAGCAGAAAAGGACTGGAGTTAATGAGGCTACTATGCCTCCTGATCCTGGAAAACCACTTCCAGAAGATGTTATGAAGCTTCTTTCAGCTGGTATTGACTTTGAGAAAAGACTTATTGAATTGTGTAACATAGCTGGAACCACTGTGTCTTTAACTCCTTCTCAGAAAGAATTAAGAGAAACAGACATAATAGGCTCAGCATCACCACCATGTTCATTAAATGATGCCAAAATACACGAAGATGGGGGTGATAACAGCTTCAGTTTGTTGCCTGTGGGCAAAATGCATTCATCTGAAATAATTGGATCGTCGGACATAAAGGCTGCAGAAAGGGAAGCCCAACATCTTCTCAAGTGGCTTGCAACTTCTCAAGCTGCAGAAGATATTAACTCTGATGATGAACTTGTTTGTGAAATGATGCTGAGTCCCCAGCTACCAGATGCAACGATTGATAAACTGCTGGAGAAAGTTAATATGCAATATGAGAGTGAGTCGCAAAAAGAATGTCAGGATATTCTAGATTCAGTTGATGATATGCTTGAGTTGAAGTTTTCTAAGCAAAAGCCTTGTCGTTCAATTGATCATGGTGATCCTATTGAAGTGTCAACTGAGAGTATAATACCCCAAGTTGATGGTTCAGCTGATGATGAATATTCAATTCCATTTGCTAGTTTGGCTGAAACCTCTTCTGCAGCAGAGAGAAATAGTGAATCCAGAAGGCTGTCTGAGTACCATGTCATGCACAGCACTGATACAGCCGTAGTTAGTAAAGATAAGAGGAGTAAGCAATGGGGGTCTTTGCCTTTTTCAGTGGCTGATAAGGTTAACTGCAAAGGAGAACAAGCTATAATGCAAGTGACTTGCCCATTTGAAAGTCAAAGTGGAGATTCTACTGATTCTGATAATGGGGTTAGAAAGAGTGCCCGTATTACAAGAAATGTGGGCAGAACTGTTTCAGAATCAAAACAACAGAGATTTGTTAACTGCTCTTTGCGGGACTTGATGAGGCGGAAGCGATCCTTTCGAGTTGAACAAACTGAATGCGATTCTGGAACAACTAAAAAGCTTGTTTTGGACAGACATGAGGGATCCAATATCTGCCTTTGGAAAAAACGAATGGATTTGAGCACAATTCAAACCAACGAGGAAGAAACAAAACTCCTGAAAAATTGTGATCTTAAACTGAGCAATCATGATAATTTAGTGAGTCGGAAACTGCCACTTCCAGATGGTAAGGATAGTTTCTTACAGGATGATATGCAAAGCGATGAATGTTTTTCTGAAAATGAAATGGAGGCTCCAGAAGCAAGTGATCTGTTTAGGACTTCTGGAAATCAAGGTTCTTTAGTGTATATGCCAAATCCCTTTCCAGATGTTCAGTTAATGAGAACAGATACCAATTATAAAATCATAACTCCTGAGAGGTGTCAACAAACTTATTCTGCATCTTCAAGCAGTGTACAGAACTTATCCATTGATAATAAAGTGTTATGCAAGCCTAATTGCACGAATCAGGATTCTCATGGCAGCATATCTTTTGCACAAGAAAGCCAAATTCCAGCAAGTCACACACGAGTGTTGCTTAATGAGAGAGTTGATAATAAAAAACATGGTGTAAATTTACTGGGTGAGAAGAATATTGTCTCAGAGTCTATTGATGATGACTTGAAGGATAAACACATGGAATTAACTGAAGTAAGTGTAGCTAAGGAAACCTGCTCAACTGACAAGAATCTTGAAAATCTTTTACCCTTGCCAACCATGCCTGATTCCCATTTACATTTGGATGAGGAAAGCTGTGATGAAATGTCAGGGAATGCTCTGGATGTTTTTCTTCCCATTTCCACAAAGGATTCCCAGAAAGAGATGAAGACTTGGAATAAATATGTTGCAATTAAAGCTCCTCGATCTCATGGGAAAAAGGATGTTGCTATCCACTATCAAAATGATGGCTCTCACGTATACGTGCTTACACCTAATATTTTGCCTCCGTCTGTAACCAGTGTGCAGAGATGGCTATCTCTAGATGAGAGAGATCACACAAGTCAAGAAACTGAAGTAGAGGCCAAGGATGTGCCTGAACACACTTCGGGACCTACTCTCCAGCCAAAGCTTTATGATGATAGTAGTGCAGAAAAGAAACCAGTTAAACCATCATGCAATAATGAAGGACAAACAGAAAGAGTGAAGGCAAGTGCAGATGGTTCACAGGATAATTCACAGATATCAGGCCCTATGAGGAAATCAAATTCTACCCCTCTGAGTCAAATTGGCTTTCGAGACCCTTCAAGTGTTGGATGTGGACAGCAATTGACATTACTCAGTATAGAGGTCCTTGCTGAATCAAGAGCAGACCTTTTACCTGACCCTCAGTTTGACGCTATCAACATTGTAGCTCTTGGTTTTCAGAATGATTGTGATTCTATTATTGAAGTTCTTGTTCTTTTGCATAATAAGTTTGAACCTTGTCAGAGAAGTTTTGATGGCTTAGTAGGCTGCAAAGTGTTGGTCTTTTCTGATGAAAAACACTTGTTAAAGGAGTTTATAAATATTGTCTCTTCATCTGACCCTGATATTTTGATGGGCTGGGATATTCAAGGGTATTCTCTTGGTTTCCTGGCAGAAAGGGCTTCACGCCTTGGTTTAGGATTACTTAACAGTTTGTCACGAACTCCATCTGATTCATCGGTTGCTTCTGAAGATGTGAAAATTTCCGGAAAAGGTATCTTGGAATTTGACGATCCTGATACTCCTAGTATAGATTGTTGTGTACAAGGAAGTTCAATAATTGAGGATGAATGGGGACGGACACATGCAAGTGGAGTTCATGTAGGTGGCAGAATTGTCCTTAATGTATGGCGGCTGATCCGCGGAGAAGTTAAGCTGAACTTATATTCAATTGAAGCTGTAGCTGAAGCTGTATTGAGGCGGAAAATTCCATTCTTTCACAACAAGGTGCTGACAAGATGGTTTTCAAGTGGTCCTGGACGAGCAAGATATCGGTGTATCAAATATGTTGTAGAAAGAACAAAGCTGAACCTTGAGATCTTAAACCAACTTGATATGGTGAATCGGACATCAGAACTTGCTCGTGTCTTTGGCATAGACTTTTTTTCTGTTCTATCACGTGGTTCACAATATCGGGTTGAATCCATGTTATTGAGGTTGGCCCATACACAAAACTATCTTGCTATCTCACCTGGAAATCAACAGGTTGCTTCTCAACCTGCCATGGAATGCCTGCCTCTAGTTATGGAACCCGAGTCAGGATTTTATTCTGATCCTGTTGTTGTATTTGACTTTCAATCTTTATATCCATCTATGATAATTGCATACAACCTTTGCTTTTGTACGTGTCTTGGCAAAGTTGTAGCTTCGAAGGCTAACACGCTTGGGGTCAGTTCATTTTCGCCAGAGCAACATGTTCTTCAGTATTTGAAAGATCAAATTTTGCTCACTCCAAATGGTGTTATGTTTGTACCTTCCAAGGTTCGCAGAGGTGTGCTTCCCCGCTTATTGGAAGAGATCTTGTCAACCAGAATAATGGTGAAACAAGCAATTAAAAAGTTGGCTCCCTCAGAGCAAGTGCTTCAGCGGATATTTAATGCAAGGCAGCTGGCATTGAAGCTCATATCCAATGTAACATATGGTTACACTGCTGCTGGATTTAGTGGTCGCATGCCTTGTGCAGAACTTGCAGACAGTATTGTTCAATGTGGCCGTAGTACACTGGAGAGGGCGATCTCATTTGTAAATCTACATGAAAAGTGGAATGCTAGAGTTATTTACGGAGATACTGATAGTATGTTTGTCCTCCTTAAAGGACGCACTATCAAAGAATCTTTCCAAATTGGGAGTGAGATTGCTTCTGCTATCACTGCTATGAATCCTAGTCCTGTTACCCTGAAGATGGAGAAAGTTTATCAACCTTGTTTCCTCCTGACAAAGAAGCGATATGTTGGCTACAGTTATGAAAGCCCTGAACAAATCGAACCTGTTTTTGATGCTAAAGGTATTGAGACAATCCGCAGGGACACGTGTGGTGCAGTTGCAAAGATAATGGAACAGTCTTTGAGATTATTTTTTCAGCATCAGGATTTATTGGAGGTCAAATGTTACTTGCAACGTCAGTGGAAGAGGATACTTTCTGGAAGATTCTCCCTGAAAGATTTCGTCTTTGCAAAGGAGGTTCGTCTGGGTACCTACAGTGGAAGGATCTCTTCACTTCCTCCTGCTGCAATTGTGGCCACTAAGGCAATGAGATCTGATCGTAGGGCAGAACCACGATATGCTGAGAGAATACCTTATGTTGTAATCCATGGTGAGCCTGGAGCCCGCCTGTCTGATATGGTTGTGGATCCATTAGAAGTCTTGGCAATTGATTCTCCATTTAGAATAAATGATTTATATTACATTAACAAGCAAATAATACCAGCCTTGCAGCGTGTCTTTAGCCTTGTTGGCGCTGACCTGATCCAGTGGTTTTTAGAGATGCCCCGTCCTGTAAGGGAAGCATCTATAAAGAATAAGTTCTCTTCAAATTTTCAGAGAACCAGAATTGATTATTACTATCTCTCGAAACATTGTATAGTATGTGGGCAGTTGGTCCAGGCTTCAGCACGTTTGTGTAGTCAATGCTCCAAAAATGAAGCAGCTGCTGCAACAGCAGTGATTAGTAAAACTTCTAAGTTGGAGCAAGAGATGCAACATCTTGTTGCTATATGTCACCACTGTGGCGGCGGTGATAGGCTTCTCGAAAGTGGGGTGAAGTGCACGTCCATTGCATGCACGGTGTTCTATGAGAGGCGGAAAGTTCAGAAAGAATTATTAGCTGCCACTGATGTCGCTGCAGAGAAAGGCTTCTATCCGAAATGCACGGTAGAATGGTTCTAA 4965 0.4091 MYSSLSQTCSDVKMVQSLVPIWEEQQKRTGVNEATMPPDPGKPLPEDVMKLLSAGIDFEKRLIELCNIAGTTVSLTPSQKELRETDIIGSASPPCSLNDAKIHEDGGDNSFSLLPVGKMHSSEIIGSSDIKAAEREAQHLLKWLATSQAAEDINSDDELVCEMMLSPQLPDATIDKLLEKVNMQYESESQKECQDILDSVDDMLELKFSKQKPCRSIDHGDPIEVSTESIIPQVDGSADDEYSIPFASLAETSSAAERNSESRRLSEYHVMHSTDTAVVSKDKRSKQWGSLPFSVADKVNCKGEQAIMQVTCPFESQSGDSTDSDNGVRKSARITRNVGRTVSESKQQRFVNCSLRDLMRRKRSFRVEQTECDSGTTKKLVLDRHEGSNICLWKKRMDLSTIQTNEEETKLLKNCDLKLSNHDNLVSRKLPLPDGKDSFLQDDMQSDECFSENEMEAPEASDLFRTSGNQGSLVYMPNPFPDVQLMRTDTNYKIITPERCQQTYSASSSSVQNLSIDNKVLCKPNCTNQDSHGSISFAQESQIPASHTRVLLNERVDNKKHGVNLLGEKNIVSESIDDDLKDKHMELTEVSVAKETCSTDKNLENLLPLPTMPDSHLHLDEESCDEMSGNALDVFLPISTKDSQKEMKTWNKYVAIKAPRSHGKKDVAIHYQNDGSHVYVLTPNILPPSVTSVQRWLSLDERDHTSQETEVEAKDVPEHTSGPTLQPKLYDDSSAEKKPVKPSCNNEGQTERVKASADGSQDNSQISGPMRKSNSTPLSQIGFRDPSSVGCGQQLTLLSIEVLAESRADLLPDPQFDAINIVALGFQNDCDSIIEVLVLLHNKFEPCQRSFDGLVGCKVLVFSDEKHLLKEFINIVSSSDPDILMGWDIQGYSLGFLAERASRLGLGLLNSLSRTPSDSSVASEDVKISGKGILEFDDPDTPSIDCCVQGSSIIEDEWGRTHASGVHVGGRIVLNVWRLIRGEVKLNLYSIEAVAEAVLRRKIPFFHNKVLTRWFSSGPGRARYRCIKYVVERTKLNLEILNQLDMVNRTSELARVFGIDFFSVLSRGSQYRVESMLLRLAHTQNYLAISPGNQQVASQPAMECLPLVMEPESGFYSDPVVVFDFQSLYPSMIIAYNLCFCTCLGKVVASKANTLGVSSFSPEQHVLQYLKDQILLTPNGVMFVPSKVRRGVLPRLLEEILSTRIMVKQAIKKLAPSEQVLQRIFNARQLALKLISNVTYGYTAAGFSGRMPCAELADSIVQCGRSTLERAISFVNLHEKWNARVIYGDTDSMFVLLKGRTIKESFQIGSEIASAITAMNPSPVTLKMEKVYQPCFLLTKKRYVGYSYESPEQIEPVFDAKGIETIRRDTCGAVAKIMEQSLRLFFQHQDLLEVKCYLQRQWKRILSGRFSLKDFVFAKEVRLGTYSGRISSLPPAAIVATKAMRSDRRAEPRYAERIPYVVIHGEPGARLSDMVVDPLEVLAIDSPFRINDLYYINKQIIPALQRVFSLVGADLIQWFLEMPRPVREASIKNKFSSNFQRTRIDYYYLSKHCIVCGQLVQASARLCSQCSKNEAAAATAVISKTSKLEQEMQHLVAICHHCGGGDRLLESGVKCTSIACTVFYERRKVQKELLAATDVAAEKGFYPKCTVEWF 1654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst6g00544 1654 CDD DNA_polB_zeta_exo 792 1042 - -
Arst6g00544 1654 SMART polmehr3 793 1299 IPR006172 GO:0000166|GO:0003676|GO:0003887
Arst6g00544 1654 PANTHER DNA POLYMERASE ZETA CATALYTIC SUBUNIT 1 1647 IPR030559 GO:0006281|GO:0016035|GO:0019985
Arst6g00544 1654 Pfam C4-type zinc-finger of DNA polymerase delta 1553 1626 IPR025687 -
Arst6g00544 1654 PANTHER DNA POLYMERASE ZETA CATALYTIC SUBUNIT 1 1647 IPR030559 GO:0006281|GO:0016035|GO:0019985
Arst6g00544 1654 FunFam DNA polymerase 802 1103 - -
Arst6g00544 1654 Pfam DNA polymerase family B, exonuclease domain 853 920 IPR006133 -
Arst6g00544 1654 MobiDBLite consensus disorder prediction 702 785 - -
Arst6g00544 1654 Gene3D - 1362 1523 IPR042087 -
Arst6g00544 1654 FunFam DNA polymerase 1362 1530 - -
Arst6g00544 1654 ProSitePatterns DNA polymerase family B signature. 1287 1295 IPR017964 GO:0000166|GO:0003676
Arst6g00544 1654 CDD POLBc_zeta 1068 1515 - -
Arst6g00544 1654 MobiDBLite consensus disorder prediction 739 785 - -
Arst6g00544 1654 Gene3D - 824 1103 IPR036397 GO:0003676
Arst6g00544 1654 SUPERFAMILY Ribonuclease H-like 794 1083 IPR012337 -
Arst6g00544 1654 SUPERFAMILY DNA/RNA polymerases 1107 1519 IPR043502 -
Arst6g00544 1654 Pfam DNA polymerase family B 1061 1509 IPR006134 GO:0000166|GO:0003677
Arst6g00544 1654 Gene3D Helix hairpin bin 1186 1246 - -
Arst6g00544 1654 FunFam DNA polymerase zeta 1187 1246 - -
Arst6g00544 1654 MobiDBLite consensus disorder prediction 702 717 - -
Arst6g00544 1654 Gene3D Palm domain of DNA polymerase 1106 1351 IPR023211 -
Arst6g00544 1654 PRINTS DNA-directed DNA-polymerase family B signature 1120 1133 IPR006172 GO:0000166|GO:0003676|GO:0003887
Arst6g00544 1654 PRINTS DNA-directed DNA-polymerase family B signature 1285 1293 IPR006172 GO:0000166|GO:0003676|GO:0003887
Arst6g00544 1654 PRINTS DNA-directed DNA-polymerase family B signature 1229 1241 IPR006172 GO:0000166|GO:0003676|GO:0003887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst6g00544 Arst-Chr6 4856888 4867164 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst6g00544 831 1636 Core DNA Replication Machinery Family AT5G63960 28.894 2.99e-88 311
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst6g00544 K02350 - gmx:100777934 2342.77