Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst6g00541 ATGTGGATATCTTCCACTGTCCCATCTGATTGGATGTGGTCACCTGCCGATGACTTTGGTGCTTCATCAAACAATAAGCCTTACTGCCCTAAAAGGCAAAGCACATCTGAGCTTGAAGGAGATGCTTCTGTAGATGAGATTCTTAATCAGCAATTTATAATGTATTCATCTCTCTCACAAACATGCTCGGATGTGAAAATGGTTCAATCACTTGTACCTATATGGGAGGAACAGCAGAAAAGGACTGGAGTTAATGAGGCTACTATGCCTCCTGATCCTGGAAAACCACTTCCAGAAGATGTTATGAAGCTTCTTTCAGCTGGTATTGACTTTGAGAAAAGACTTATTGAATTGTGTAACATAGCTGGAACCACTGTGTCTTTAACTCCTTCTCAGAAAGAATTAAGAGAAACAGACATAATAGGCTCAGCATCACCACCATGTTCATTAAATGATGCCAAAATACACGAAGATGGGGGTGATAACAGCTTCAGTTTGTTGCCTGTGGGCAAAATGCATTCATCTGAAATAATTGGATCGTCGGACATAAAGGCTGCAGAAAGGGAAGCCCAACATCTTCTCAAGTGGCTTGCAACTTCTCAAGCTGCAGAAGATATTAACTCTGATGATGAACTTGTTTGTGAAATGATGCTGAGTCCCCAGCTACCAGATGCAACGATTGATAAACTGCTGGAGAAAGTTAATATGCAATATGAGAGTGAGTCGCAAAAAGAATGTCAGGATATTCTAGATTCAGTTGATGATATGCTTGAGTTGAAGTTTTCTAAGCAAAAGCCTTGTCGTTCAATTGATCATGGTGATCCTATTGAAGTGTCAACTGAGAGTATAATACCCCAAGTTGATGGTTCAGCTGATGATGAATATTCAATTCCATTTGCTAGTTTGGCTGAAACCTCTTCTGCAGCAGAGAGAAATAGTGAATCCAGAAGGCTGTCTGAGTACCATGTCATGCACAGCACTGATACAGCCGTAGTTAGTAAAGATAAGAGGAGTAAGCAATGGGGGTCTTTGCCTTTTTCAGTGGCTGATAAGGTTAACTGCAAAGGAGAACAAGCTATAATGCAAGTGACTTGCCCATTTGAAAGTCAAAGTGGAGATTCTACTGATTCTGATAATGGGGTTAGAAAGAGTGCCCGTATTACAAGAAATGTGGGCAGAACTGTTTCAGAATCAAAACAACAGAGATTTGTTAACTGCTCTTTGCGGGACTTGATGAGGCGGAAGCGATCCTTTCGAGTTGAACAAACTGAATGCGATTCTGGAACAACTAAAAAGCTTGTTTTGGACAGACATGAGGGATCCAATATCTGCCTTTGGAAAAAACGAATGGATTTGAGCACAATTCAAACCAACGAGGAAGAAACAAAACTCCTGAAAAATTGTGATCTTAAACTGAGCAATCATGATAATTTAGTGAGTCGGAAACTGCCACTTCCAGATGGTAAGGATAGTTTCTTACAGGATGATATGCAAAGCGATGAATGTTTTTCTGAAAATGAAATGGAGGCTCCAGAAGCAAGTGATCTGTTTAGGACTTCTGGAAATCAAGGTTCTTTAGTGTATATGCCAAATCCCTTTCCAGATGTTCAGTTAATGAGAACAGATACCAATTATAAAATCATAACTCCTGAGAGGTGTCAACAAACTTATTCTGCATCTTCAAGCAGTGTACAGAACTTATCCATTGATAATAAAGTGTTATGCAAGCCTAATTGCACGAATCAGGATTCTCATGGCAGCATATCTTTTGCACAAGAAAGCCAAATTCCAGCAAGTCACACACGAGTGTTGCTTAATGAGAGAGTTGATAATAAAAAACATGGTGTAAATTTACTGGGTGAGAAGAATATTGTCTCAGAGTCTATTGATGATGACTTGAAGGATAAACACATGGAATTAACTGAAGTAAGTGTAGCTAAGGAAACCTGCTCAACTGACAAGAATCTTGAAAATCTTTTACCCTTGCCAACCATGCCTGATTCCCATTTACATTTGGATGAGGAAAGCTGTGATGAAATGTCAGGGAATGCTCTGGATGTTTTTCTTCCCATTTCCACAAAGGATTCCCAGAAAGAGATGAAGACTTGGAATAAATATGTTGCAATTAAAGCTCCTCGATCTCATGGGAAAAAGGATGTTGCTATCCACTATCAAAATGATGGCTCTCACGTATACGTGCTTACACCTAATATTTTGCCTCCGTCTGTAACCAGTGTGCAGAGATGGCTATCTCTAGATGAGAGAGATCACACAAGTCAAGAAACTGAAGTAGAGGCCAAGGATGTGCCTGAACACACTTCGGGACCTACTCTCCAGCCAAAGCTTTATGATGATAGTAGTGCAGAAAAGAAACCAGTTAAACCATCATGCAATAATGAAGGACAAACAGAAAGAGTGAAGGCAAGTGCAGATGGTTCACAGGATAATTCACAGATATCAGGCCCTATGAGGAAATCAAATTCTACCCCTCTGAGTCAAATTGGCTTTCGAGACCCTTCAAGTGTTGGATGTGGACAGCAATTGACATTACTCAGTATAGAGGTCCTTGCTGAATCAAGAGCAGACCTTTTACCTGACCCTCAGTTTGACGCTATCAACATTGTAGCTCTTGGTTTTCAGAATGATTGTGATTCTATTATTGAAGTTCTTGTTCTTTTGCATAATAAGTTTGAACCTTGTCAGAGAAGTTTTGATGGCTTAGTAGGCTGCAAAGTGTTGGTCTTTTCTGATGAAAAACACTTGTTAAAGGAGTTTATAAATATTGTCTCTTCATCTGACCCTGATATTTTGATGGGCTGGGATATTCAAGGGTATTCTCTTGGTTTCCTGGCAGAAAGGGCTTCACGCCTTGGTTTAGGATTACTTAACAGTTTGTCACGAACTCCATCTGATTCATCGGTTGCTTCTGAAGATGTGAAAATTTCCGGAAAAGGTATCTTGGAATTTGACGATCCTGATACTCCTAGTATAGATTGTTGTGTACAAGGAAGTTCAATAATTGAGGATGAATGGGGACGGACACATGCAAGTGGAGTTCATGTAGGTGGCAGAATTGTCCTTAATGTATGGCGGCTGATCCGCGGAGAAGTTAAGCTGAACTTATATTCAATTGAAGCTGTAGCTGAAGCTGTATTGAGGCGGAAAATTCCATTCTTTCACAACAAGGTGCTGACAAGATGGTTTTCAAGTGGTCCTGGACGAGCAAGATATCGGTGTATCAAATATGTTGTAGAAAGAACAAAGCTGAACCTTGAGATCTTAAACCAACTTGATATGGTGAATCGGACATCAGAACTTGCTCGTGTCTTTGGCATAGACTTTTTTTCTGTTCTATCACGTGGTTCACAATATCGGGTTGAATCCATGTTATTGAGGTTGGCCCATACACAAAACTATCTTGCTATCTCACCTGGAAATCAACAGGTTGCTTCTCAACCTGCCATGGAATGCCTGCCTCTAGTTATGGAACCCGAGTCAGGATTTTATTCTGATCCTGTTGTTGTATTTGACTTTCAATCTTTATATCCATCTATGATAATTGCATACAACCTTTGCTTTTGTACGTGTCTTGGCAAAGTTGTAGCTTCGAAGGCTAACACGCTTGGGGTCAGTTCATTTTCGCCAGAGCAACATGTTCTTCAGTATTTGAAAGATCAAATTTTGCTCACTCCAAATGGTGTTATGTTTGTACCTTCCAAGGTTCGCAGAGGTGTGCTTCCCCGCTTATTGGAAGAGATCTTGTCAACCAGAATAATGGTGAAACAAGCAATTAAAAAGTTGGCTCCCTCAGAGCAAGTGCTTCAGCGGATATTTAATGCAAGGCAGCTGGCATTGAAGCTCATATCCAATGTAACATATGGTTACACTGCTGCTGGATTTAGTGGTCGCATGCCTTGTGCAGAACTTGCAGACAGTATTGTTCAATGTGGCCGTAGTACACTGGAGAGGGCGATCTCATTTGTAAATCTACATGAAAAGTGGAATGCTAGAGTTATTTACGGAGATACTGATAGTATGTTTGTCCTCCTTAAAGGACGCACTATCAAAGAATCTTTCCAAATTGGGAGTGAGATTGCTTCTGCTATCACTGCTATGAATCCTAGTCCTGTTACCCTGAAGATGGAGAAAGTTTATCAACCTTGTTTCCTCCTGACAAAGAAGCGATATGTTGGCTACAGTTATGAAAGCCCTGAACAAATCGAACCTGTTTTTGATGCTAAAGGTATTGAGACAATCCGCAGGGACACGTGTGGTGCAGTTGCAAAGATAATGGAACAGTCTTTGAGATTATTTTTTCAGCATCAGGATTTATTGGAGGTCAAATGTTACTTGCAACGTCAGTGGAAGAGGATACTTTCTGGAAGATTCTCCCTGAAAGATTTCGTCTTTGCAAAGGAGGTTCGTCTGGGTACCTACAGTGGAAGGATCTCTTCACTTCCTCCTGCTGCAATTGTGGCCACTAAGGCAATGAGATCTGATCGTAGGGCAGAACCACGATATGCTGAGAGAATACCTTATGTTGTAATCCATGGTGAGCCTGGAGCCCGCCTGTCTGATATGGTTGTGGATCCATTAGAAGTCTTGGCAATTGATTCTCCATTTAGAATAAATGATTTATATTACATTAACAAGCAAATAATACCAGCCTTGCAGCGTGTCTTTAGCCTTGTTGGCGCTGACCTGATCCAGTGGTTTTTAGAGATGCCCCGTCCTGTAAGGGAAGCATCTATAAAGAATAAGTTCTCTTCAAATTTTCAGAGAACCAGAATTGATTATTACTATCTCTCGAAACATTGTATAGTATGTGGGCAGTTGGTCCAGGCTTCAGCACGTTTGTGTAGTCAATGCTCCAAAAATGAAGCAGCTGCTGCAACAGCAGTGATTAGTAAAACTTCTAAGTTGGAGCAAGAGATGCAACATCTTGTTGCTATATGTCACCACTGTGGCGGCGGTGATAGGCTTCTCGAAAGTGGGGTGAAGTGCACGTCCATTGCATGCACGGTGTTCTATGAGAGGCGGAAAGTTCAGAAAGAATTATTAGCTGCCACTGATGTCGCTGCAGAGAAAGGCTTCTATCCGAAATGCACGGTAGAATGGTTCTAA 5124 0.4094 MWISSTVPSDWMWSPADDFGASSNNKPYCPKRQSTSELEGDASVDEILNQQFIMYSSLSQTCSDVKMVQSLVPIWEEQQKRTGVNEATMPPDPGKPLPEDVMKLLSAGIDFEKRLIELCNIAGTTVSLTPSQKELRETDIIGSASPPCSLNDAKIHEDGGDNSFSLLPVGKMHSSEIIGSSDIKAAEREAQHLLKWLATSQAAEDINSDDELVCEMMLSPQLPDATIDKLLEKVNMQYESESQKECQDILDSVDDMLELKFSKQKPCRSIDHGDPIEVSTESIIPQVDGSADDEYSIPFASLAETSSAAERNSESRRLSEYHVMHSTDTAVVSKDKRSKQWGSLPFSVADKVNCKGEQAIMQVTCPFESQSGDSTDSDNGVRKSARITRNVGRTVSESKQQRFVNCSLRDLMRRKRSFRVEQTECDSGTTKKLVLDRHEGSNICLWKKRMDLSTIQTNEEETKLLKNCDLKLSNHDNLVSRKLPLPDGKDSFLQDDMQSDECFSENEMEAPEASDLFRTSGNQGSLVYMPNPFPDVQLMRTDTNYKIITPERCQQTYSASSSSVQNLSIDNKVLCKPNCTNQDSHGSISFAQESQIPASHTRVLLNERVDNKKHGVNLLGEKNIVSESIDDDLKDKHMELTEVSVAKETCSTDKNLENLLPLPTMPDSHLHLDEESCDEMSGNALDVFLPISTKDSQKEMKTWNKYVAIKAPRSHGKKDVAIHYQNDGSHVYVLTPNILPPSVTSVQRWLSLDERDHTSQETEVEAKDVPEHTSGPTLQPKLYDDSSAEKKPVKPSCNNEGQTERVKASADGSQDNSQISGPMRKSNSTPLSQIGFRDPSSVGCGQQLTLLSIEVLAESRADLLPDPQFDAINIVALGFQNDCDSIIEVLVLLHNKFEPCQRSFDGLVGCKVLVFSDEKHLLKEFINIVSSSDPDILMGWDIQGYSLGFLAERASRLGLGLLNSLSRTPSDSSVASEDVKISGKGILEFDDPDTPSIDCCVQGSSIIEDEWGRTHASGVHVGGRIVLNVWRLIRGEVKLNLYSIEAVAEAVLRRKIPFFHNKVLTRWFSSGPGRARYRCIKYVVERTKLNLEILNQLDMVNRTSELARVFGIDFFSVLSRGSQYRVESMLLRLAHTQNYLAISPGNQQVASQPAMECLPLVMEPESGFYSDPVVVFDFQSLYPSMIIAYNLCFCTCLGKVVASKANTLGVSSFSPEQHVLQYLKDQILLTPNGVMFVPSKVRRGVLPRLLEEILSTRIMVKQAIKKLAPSEQVLQRIFNARQLALKLISNVTYGYTAAGFSGRMPCAELADSIVQCGRSTLERAISFVNLHEKWNARVIYGDTDSMFVLLKGRTIKESFQIGSEIASAITAMNPSPVTLKMEKVYQPCFLLTKKRYVGYSYESPEQIEPVFDAKGIETIRRDTCGAVAKIMEQSLRLFFQHQDLLEVKCYLQRQWKRILSGRFSLKDFVFAKEVRLGTYSGRISSLPPAAIVATKAMRSDRRAEPRYAERIPYVVIHGEPGARLSDMVVDPLEVLAIDSPFRINDLYYINKQIIPALQRVFSLVGADLIQWFLEMPRPVREASIKNKFSSNFQRTRIDYYYLSKHCIVCGQLVQASARLCSQCSKNEAAAATAVISKTSKLEQEMQHLVAICHHCGGGDRLLESGVKCTSIACTVFYERRKVQKELLAATDVAAEKGFYPKCTVEWF 1707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst6g00541 1707 Pfam DNA polymerase family B 1114 1562 IPR006134 GO:0000166|GO:0003677
Arst6g00541 1707 SUPERFAMILY Ribonuclease H-like 847 1136 IPR012337 -
Arst6g00541 1707 PRINTS DNA-directed DNA-polymerase family B signature 1338 1346 IPR006172 GO:0000166|GO:0003676|GO:0003887
Arst6g00541 1707 PRINTS DNA-directed DNA-polymerase family B signature 1173 1186 IPR006172 GO:0000166|GO:0003676|GO:0003887
Arst6g00541 1707 PRINTS DNA-directed DNA-polymerase family B signature 1282 1294 IPR006172 GO:0000166|GO:0003676|GO:0003887
Arst6g00541 1707 Pfam C4-type zinc-finger of DNA polymerase delta 1606 1679 IPR025687 -
Arst6g00541 1707 MobiDBLite consensus disorder prediction 755 770 - -
Arst6g00541 1707 ProSitePatterns DNA polymerase family B signature. 1340 1348 IPR017964 GO:0000166|GO:0003676
Arst6g00541 1707 SUPERFAMILY DNA/RNA polymerases 1160 1572 IPR043502 -
Arst6g00541 1707 SMART polmehr3 846 1352 IPR006172 GO:0000166|GO:0003676|GO:0003887
Arst6g00541 1707 FunFam DNA polymerase zeta 1240 1299 - -
Arst6g00541 1707 Gene3D - 1415 1576 IPR042087 -
Arst6g00541 1707 Pfam DNA polymerase family B, exonuclease domain 906 973 IPR006133 -
Arst6g00541 1707 MobiDBLite consensus disorder prediction 755 838 - -
Arst6g00541 1707 Gene3D Palm domain of DNA polymerase 1159 1404 IPR023211 -
Arst6g00541 1707 PANTHER DNA POLYMERASE ZETA CATALYTIC SUBUNIT 2 1700 IPR030559 GO:0006281|GO:0016035|GO:0019985
Arst6g00541 1707 FunFam DNA polymerase 1415 1583 - -
Arst6g00541 1707 PANTHER DNA POLYMERASE ZETA CATALYTIC SUBUNIT 2 1700 IPR030559 GO:0006281|GO:0016035|GO:0019985
Arst6g00541 1707 CDD DNA_polB_zeta_exo 845 1095 - -
Arst6g00541 1707 CDD POLBc_zeta 1121 1568 - -
Arst6g00541 1707 Gene3D Helix hairpin bin 1239 1299 - -
Arst6g00541 1707 MobiDBLite consensus disorder prediction 792 838 - -
Arst6g00541 1707 Gene3D - 877 1156 IPR036397 GO:0003676
Arst6g00541 1707 FunFam DNA polymerase 855 1156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst6g00541 Arst-Chr6 4856700 4867164 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst6g00541 884 1689 Core DNA Replication Machinery Family AT5G63960 28.894 3.33e-88 311
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst6g00541 K02350 - gmx:100777934 2417.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst6g00541 6 4856700 4867164 Arst6g00541 6 4856700 4867164 ECH