Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst6g00517 ATGACGAAGGACAAAAACGACCAAACCACCTCCAATTTCTGCTTTCTTTTCATTTTCTTCTTCCTTCTCTCCGTTCCGTCAACGTTTGCGCAGAACCAAAATGCCGCTTCTGACAATAACAACAACTACAACACGCAGTTCAGCCCTTCGCTCGCGATAATCGTCGTCATTCTCGTTGCAGCACTCTTCCTCATGGGATTCTTCTCCATCTACATCCGCCACTGCGCCGATTCACCCTCCGGCACCGTCCTTCCAACCACGGGAGGCGGGAGGTCCAGAAGAGGGGCACGTGGTCTCGATCCTGCAGTCATCGAGACTTTCCCGATTCTGGAGTATTCGGAGGTCAAGATCCACAAGATTGGAAAAGAGGTTCTTGAATGTGCGGTGTGCCTGTGTGAATTCGAAGACACCGAAACGCTGCGTTTGATTCCCAAGTGTGACCACGTGTTCCATCCGGAGTGCATCGACGAGTGGCTAGCCTCCCACACAACCTGCCCCGTCTGCCGCGCCAACCTCGTCCCGCAACCCGGCGAGTCAGTCCATGCGGTTCCACTCGTGCCAACCACCGACGTCGAGGCGCAAAACGACGCCGTCGTTGACACCGCAGTGCCGGAGGTGCGTGTCAACGTGGCGGATGCTGAAGGAGGAGTCGCGGCGTCGTCGGAGCCGGAAGTGATTGCGATTCCGAAAAGCTTGACGCTGAATCGGAACAGGACGACGCGCGGTTCCAACCGGAGGAGGCAGTTCCCTCGGTCGCACTCGACCGGGCATTCTCTGGTCCAACCGGGAGAGAACACGGACCGGTTCACTTTGAGATTGCCTGTGGCCGTTAGAAGAGAGATAATAAACCGGGAGTTGCAACGGTCTAACAGCTTGTTGGTTTTGCCTAGGGACGGTAGTTCGAGACAAGGAAGTAGTAGGGGAAGGACTTTGAGACGGTTGGACCGGAGTTTCAAATCCGACCGGTGGGTTTTGACGATGGCGCCACCGTTCTTGGTCAGAGGATCTTCGGTTAGGTCGCCGAAGGTGGTTGATAGCACCGGCGGGGCAGGGGCGTCGTCGTCTACAGCCCCTATTTTGCCGCCGTCGGCCGTTGACTCTGCTCGACCTCCGGTATGA 1119 0.5657 MTKDKNDQTTSNFCFLFIFFFLLSVPSTFAQNQNAASDNNNNYNTQFSPSLAIIVVILVAALFLMGFFSIYIRHCADSPSGTVLPTTGGGRSRRGARGLDPAVIETFPILEYSEVKIHKIGKEVLECAVCLCEFEDTETLRLIPKCDHVFHPECIDEWLASHTTCPVCRANLVPQPGESVHAVPLVPTTDVEAQNDAVVDTAVPEVRVNVADAEGGVAASSEPEVIAIPKSLTLNRNRTTRGSNRRRQFPRSHSTGHSLVQPGENTDRFTLRLPVAVRREIINRELQRSNSLLVLPRDGSSRQGSSRGRTLRRLDRSFKSDRWVLTMAPPFLVRGSSVRSPKVVDSTGGAGASSSTAPILPPSAVDSARPPV 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst6g00517 372 CDD RING-H2_EL5-like 126 169 - -
Arst6g00517 372 SUPERFAMILY RING/U-box 126 176 - -
Arst6g00517 372 SMART ring_2 127 168 IPR001841 -
Arst6g00517 372 FunFam E3 ubiquitin-protein ligase ATL6 88 175 - -
Arst6g00517 372 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 90 174 IPR013083 -
Arst6g00517 372 MobiDBLite consensus disorder prediction 335 372 - -
Arst6g00517 372 Pfam Ring finger domain 126 169 IPR001841 -
Arst6g00517 372 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 28 268 - -
Arst6g00517 372 MobiDBLite consensus disorder prediction 238 265 - -
Arst6g00517 372 ProSiteProfiles Zinc finger RING-type profile. 127 169 IPR001841 -
Arst6g00517 372 MobiDBLite consensus disorder prediction 340 361 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst6g00517 Arst-Chr6 4684596 4685919 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst6g00517 16 348 Rapid Response to Elicitors AT3G05200 46.779 3.62e-91 277
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst6g00517 K10664 - gmx:100781706 409.453