Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst6g00409 ATGGTTATGGCGAAGGTGAAGAGGCAGAAGCTGCAAGCATGCATCACGTGCCCGCTCTGCCACAAACTCCTCCGAGACGCCACCACCATCTCCCTCTGCCTTCACACTTTTTGCAGGAAGTGCATATATAAGAAGCTTTCAGATGATGAGATGGATTGTTGTCCAGTATGTTATGTTGATCTCGGATGCCTTCCACTCCAAAAACTCAGGCCAGACCACAATTTGCAAGATATTAGGGCCAAAATATTCCCTTTTAGGCGAAGAAAAATCGATGCTCTTCAAGTTGTTTTGCCTGCAAAGAGGAAGGAAAGATCACTTTCATCATTGGTGGTTAATGCTCCCAAGGTTTCAAATCAGACTGGCTTCACAGCCAAGAGAACAAAATCTGGCATAAGAAAGGCAGCTGAAGAAACATATGGTGAAGATAATCTGGGTTCTTTTGTAGCTGAGAAGAGGCCCAATGAAGATACAGAAAACAGTATGGAACTTGCAGAAGGGAAGGGTGATCTCTGGACTCCCTTGAACTGTCTCGTTGAAGCTGCCAATCGAACAAAGTCCTCCAAATCAAACTCACAAGGGACTCCTCATGCCAAGTTAGAGTCTCCATCAACTGCTTATGGTGGACTAGACATGGCTGCAACCACAACCAAATCAGACCTACCTACTTCATTGAAGAGTGCAGTTCACATGGCTAAAACTAAAATCAAGGATAATAGACATAAAAGGTTTGGAGCTGACAAGGAGGGACATACCCTGCATTCAGGACCTGCAGTAAAGCAAAAAAGGCCGCTGCGTCCCGGTCAGGAAAGAGCAGAAGCATCTGAGACATCTGCCTCAGATACAACAGGGAGCAGGTGTGATGGGAAAAACAGTCCTATTTGGTTTTCCTTAGTTGCTTCGGAAGACCAGAAGGGAGATGTTCCTTTGCCACAGATTTCAGCATGTTATTTAAGAATAAAGGATGGTACTGTGCCTGTCTCATTTATACAAAAGTATCTTGTGAAGAAACTTAATCTAACAAATGAAGCAGAGGTGGAAATAATGTGCCGGGGTCAGCCTGTGTTGCCAAATTTGCAGCTGCATAACTTAGTAGACTTGTGGTTCTGCTCAGGGTCAACCACAAAGAAGATGCCGGCATCTGTTGGCTCCTCGGCTAAGGACTTTGTCATGGTTTTATCATATTGTCGAAAGGTCGTACCTCATTGA 1206 0.4469 MVMAKVKRQKLQACITCPLCHKLLRDATTISLCLHTFCRKCIYKKLSDDEMDCCPVCYVDLGCLPLQKLRPDHNLQDIRAKIFPFRRRKIDALQVVLPAKRKERSLSSLVVNAPKVSNQTGFTAKRTKSGIRKAAEETYGEDNLGSFVAEKRPNEDTENSMELAEGKGDLWTPLNCLVEAANRTKSSKSNSQGTPHAKLESPSTAYGGLDMAATTTKSDLPTSLKSAVHMAKTKIKDNRHKRFGADKEGHTLHSGPAVKQKRPLRPGQERAEASETSASDTTGSRCDGKNSPIWFSLVASEDQKGDVPLPQISACYLRIKDGTVPVSFIQKYLVKKLNLTNEAEVEIMCRGQPVLPNLQLHNLVDLWFCSGSTTKKMPASVGSSAKDFVMVLSYCRKVVPH 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst6g00409 401 ProSitePatterns Zinc finger RING-type signature. 33 42 IPR017907 -
Arst6g00409 401 Gene3D - 274 378 - -
Arst6g00409 401 MobiDBLite consensus disorder prediction 272 287 - -
Arst6g00409 401 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 110 IPR013083 -
Arst6g00409 401 ProSiteProfiles Zinc finger RING-type profile. 17 57 IPR001841 -
Arst6g00409 401 SMART ring_2 17 57 IPR001841 -
Arst6g00409 401 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 3 397 IPR044807 GO:0004842
Arst6g00409 401 MobiDBLite consensus disorder prediction 236 287 - -
Arst6g00409 401 Pfam Zinc finger, C3HC4 type (RING finger) 17 57 - -
Arst6g00409 401 CDD RING-HC_PCGF 15 57 - -
Arst6g00409 401 MobiDBLite consensus disorder prediction 239 255 - -
Arst6g00409 401 MobiDBLite consensus disorder prediction 183 199 - -
Arst6g00409 401 SUPERFAMILY RING/U-box 11 81 - -
Arst6g00409 401 MobiDBLite consensus disorder prediction 183 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst6g00409 Arst-Chr6 3748529 3751566 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst6g00409 2 320 C3H Transcription Factor Family AT2G30580 41.111 1.53e-74 234
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst6g00409 K16277 - gmx:100783999 566.229