Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst6g00408 ATGGCTCCCGATGCTTCCGACGCTCTCGCAGTGAGGCAGAAAGTTCAGCAATTTCTGAACGCTGCTCGCACCGGCAATCTTGATCTCCTCAAGAATTTAGCGACTCAGTTGGACGAGTCCAAGGATTTGGCCAAGACCGTGGACTCAATTAAGGACGCAAACAAGCGAGGAGCCCTGCACTTCGCCGCCCGCGAAGGCCAGACCGAGGTTTGCAAGTACTTGCTTGAGGAATTGAAGCTCCATGTCGATTCAAAAGATGATGATGGGGAAACTGCTCTCATTCATGCTGCTCGTCAGGGGCACACTGCCACTGCTAAATATCTCATTGACCGTGGTGCTAATCCCACCATAGCTAGCAATTTAGGGGCTACGGCCTTGCACCATTCTGCAGGGATAGGGGATACTGAGCTGCTCAAGCATTTGCTTTCTACAGGAATTAATCCTGATTTGGAAAGTGATGCCGGAACGCCTTTGGTTTGGGCTGCCGGTCATGGCCAACAAGCTGCCGTCAGTGTTCTACTAGAACATGGTGCAAATCCTAATGCTGAAACCGATGATGGTATTACCCCACTCCTTTCATCTGTGGCAGCCAGCTCGCTGGCATGCTTAGAGGAGTTAATTCAGGCAGGTGCGAAAGTAAATATTAGTGCCGGTGGAGCAACTCCTTTACACATTGCAGCTGATAATGGCAGTCTGGAAATTATAAATTGCTTATTGAAAGCTGGAGCTGATCCTAATGTGTCCGATGAGGATGGTGTTAAGCCAATACAAGTTGCGGCTGCAAGGGGCAATCGTGGAGCTGTTGAGATATTGTTCCCCTTGACATCCAAGATTGATGCCGTTCCTAATTGGACTGTTGATGGGATAATCGAGTATATGCAGTCTGAAATTAAGAAGCAACAGGATGAATCAACAACTAGCCGGCCGAAGGATACTACTGTGTCTCATCAGAAAAATGTCCCTGAGGTGGCACCTGAAGCCAAAAAGAGAGCAGCAGAAGCAAAAGCAAGAGGGGATGAGGCCTTTAAGAGGCAAGACTACAACATGGCCATAGATTCTTATACCCAAGCAATTGATCTGGACCCTAGTGAGGGTACTTTGCTATCCAATAGAAGTCTCTGTTGGATTAAGTTGGGTCAAGCTGAGCATGCTTTAGCCGATGCAAAGGCGTGCAGAATATTAAGACCGGATTGGCCGAAAGCCTGTTATAGGGAAGGAGCAGCTTTGAGAATTTTACAGAAGTTTGATGAAGCTGCAAATGCTTTTTATGAGGGAGTAAAGCTTGATCCTGAGAATAAGGAGCTAGTAAATGCATTCAGGGAAGCTGTCGAAGCTGGGAGGAAGTTTCATGGTAAAACAGCTCAGAATAATTCATAA 1377 0.472 MAPDASDALAVRQKVQQFLNAARTGNLDLLKNLATQLDESKDLAKTVDSIKDANKRGALHFAAREGQTEVCKYLLEELKLHVDSKDDDGETALIHAARQGHTATAKYLIDRGANPTIASNLGATALHHSAGIGDTELLKHLLSTGINPDLESDAGTPLVWAAGHGQQAAVSVLLEHGANPNAETDDGITPLLSSVAASSLACLEELIQAGAKVNISAGGATPLHIAADNGSLEIINCLLKAGADPNVSDEDGVKPIQVAAARGNRGAVEILFPLTSKIDAVPNWTVDGIIEYMQSEIKKQQDESTTSRPKDTTVSHQKNVPEVAPEAKKRAAEAKARGDEAFKRQDYNMAIDSYTQAIDLDPSEGTLLSNRSLCWIKLGQAEHALADAKACRILRPDWPKACYREGAALRILQKFDEAANAFYEGVKLDPENKELVNAFREAVEAGRKFHGKTAQNNS 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst6g00408 458 SMART tpr_5 365 398 IPR019734 GO:0005515
Arst6g00408 458 SMART tpr_5 331 364 IPR019734 GO:0005515
Arst6g00408 458 SMART tpr_5 399 432 IPR019734 GO:0005515
Arst6g00408 458 MobiDBLite consensus disorder prediction 297 339 - -
Arst6g00408 458 ProSiteProfiles Ankyrin repeat profile. 218 250 IPR002110 GO:0005515
Arst6g00408 458 ProSiteProfiles Ankyrin repeat region circular profile. 121 153 - -
Arst6g00408 458 ProSiteProfiles Ankyrin repeat region circular profile. 218 250 - -
Arst6g00408 458 ProSiteProfiles Ankyrin repeat profile. 186 218 IPR002110 GO:0005515
Arst6g00408 458 PRINTS Ankyrin repeat signature 122 137 IPR002110 GO:0005515
Arst6g00408 458 PRINTS Ankyrin repeat signature 169 183 IPR002110 GO:0005515
Arst6g00408 458 SMART ANK_2a 54 84 IPR002110 GO:0005515
Arst6g00408 458 SMART ANK_2a 218 247 IPR002110 GO:0005515
Arst6g00408 458 SMART ANK_2a 153 182 IPR002110 GO:0005515
Arst6g00408 458 SMART ANK_2a 88 117 IPR002110 GO:0005515
Arst6g00408 458 SMART ANK_2a 121 150 IPR002110 GO:0005515
Arst6g00408 458 SMART ANK_2a 186 215 IPR002110 GO:0005515
Arst6g00408 458 SMART ANK_2a 251 280 IPR002110 GO:0005515
Arst6g00408 458 Gene3D - 9 122 IPR036770 -
Arst6g00408 458 Gene3D - 190 274 IPR036770 -
Arst6g00408 458 MobiDBLite consensus disorder prediction 322 339 - -
Arst6g00408 458 Gene3D Tetratricopeptide repeat domain 329 444 IPR011990 GO:0005515
Arst6g00408 458 ProSiteProfiles TPR repeat profile. 399 432 IPR019734 GO:0005515
Arst6g00408 458 ProSiteProfiles Ankyrin repeat region circular profile. 88 114 - -
Arst6g00408 458 Pfam Tetratricopeptide repeat 400 432 IPR019734 GO:0005515
Arst6g00408 458 Pfam Tetratricopeptide repeat 338 363 IPR019734 GO:0005515
Arst6g00408 458 ProSiteProfiles Ankyrin repeat profile. 121 153 IPR002110 GO:0005515
Arst6g00408 458 ProSiteProfiles Ankyrin repeat profile. 153 185 IPR002110 GO:0005515
Arst6g00408 458 ProSiteProfiles TPR repeat profile. 331 364 IPR019734 GO:0005515
Arst6g00408 458 Gene3D - 123 189 IPR036770 -
Arst6g00408 458 ProSiteProfiles Ankyrin repeat profile. 88 120 IPR002110 GO:0005515
Arst6g00408 458 SUPERFAMILY Ankyrin repeat 19 273 IPR036770 -
Arst6g00408 458 ProSiteProfiles Ankyrin repeat region circular profile. 153 182 - -
Arst6g00408 458 Pfam Ankyrin repeats (3 copies) 20 117 IPR002110 GO:0005515
Arst6g00408 458 Pfam Ankyrin repeats (3 copies) 196 273 IPR002110 GO:0005515
Arst6g00408 458 Pfam Ankyrin repeats (3 copies) 122 182 IPR002110 GO:0005515
Arst6g00408 458 PANTHER ANKYRIN REPEAT FAMILY PROTEIN 8 449 - -
Arst6g00408 458 SUPERFAMILY TPR-like 330 442 IPR011990 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst6g00408 125 328 Ion Channels AT4G32500 29.327 1.70e-12 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst6g00408 - - gmx:100798118 739.954