Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst6g00353 ATGTTGAAGCTGTCTCGCCTTCTACCTTCCATTTCCGGTTCCAGCCCCCGCTTACTGGAACCCCTCTCCTTTACAAAACCTGATCCTAGGGATTCAGCTGCGTTTTCTACAGCTACCAATAATAAATATGCTGCTAAAGGATATACGTCAAATCGCATATTTGCTCCTTATTCCGTTTACAAGGGCAAAGCTGCTTTCTCTTTGAGTCCTTGTCTTCCAACTTTCACCAAGTTGGATAGTGGGGCCGTTGTAGTTGATCGCCGTGGTTCAATGATGATGATTTTCATGCACTCCATTGGGGAGCGCAAGTATGACTGGGAGAACAAGCAGAGATTTGCTCTCTCGGCGACTGAAGTTGGCTCTTTGATAAGCATGGGCCCTCAGGATTCTTGTGAATTCTTTCATGATCCCTCCATGTTATCGAGTAATGCTGGTCAAGTGAGAAAAAGCTTATCAATTAAGCCTCATGCAAGCAGCAATGGCTACTTCGTGTCTTTGACTGTTGTCAATAACCTGCTAAATACCAAGGATTACTTGAGTGTCCCTGTCACGACTGCTGAGTTTGCTGTGATGAAGACAGCTTGCAGTTTTGCATTGCCACACATCATGGGTTGGGACCGCATGACTCATCAGTCAGGGGGCACGGTTGGTCTTCAATCGAAAGTGGAACCACCTGCTTTAGACTTGGAATGGGATAAGTAA 702 0.4587 MLKLSRLLPSISGSSPRLLEPLSFTKPDPRDSAAFSTATNNKYAAKGYTSNRIFAPYSVYKGKAAFSLSPCLPTFTKLDSGAVVVDRRGSMMMIFMHSIGERKYDWENKQRFALSATEVGSLISMGPQDSCEFFHDPSMLSSNAGQVRKSLSIKPHASSNGYFVSLTVVNNLLNTKDYLSVPVTTAEFAVMKTACSFALPHIMGWDRMTHQSGGTVGLQSKVEPPALDLEWDK 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst6g00353 233 Gene3D Transcriptional Coactivator Pc4; Chain A 43 213 IPR009044 GO:0003677|GO:0006355
Arst6g00353 233 Pfam Whirly transcription factor 59 193 IPR013742 GO:0003697|GO:0006355|GO:0006952
Arst6g00353 233 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 29 233 IPR013742 GO:0003697|GO:0006355|GO:0006952
Arst6g00353 233 SUPERFAMILY ssDNA-binding transcriptional regulator domain 50 212 IPR009044 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst6g00353 Arst-Chr6 3203017 3205559 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst6g00353 34 233 Whirly Transcription Factor Family AT1G71260 61.321 6.94e-90 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Whirly Arst6g00353 Whirly 1.2e-54 CL0609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst6g00353 K26561 - gmx:100817863 345.125