Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst6g00336 ATGGCGAGGAGAGAGAGAGGTTTGTCTGCATCTGCGGCGGATGGAGGTGGTGGAAAAGCGGCGGAATTGAAGGAGAAGCTGAGGGGGCTGGTGAAGGCCATCTTGGAGGACGACGACTACACCACGCGCCACGCTGAAGACGCCATCGCCACTCTATCGACTCTTAGGGATTTGAAGAGAGCATCGCCCTCATCCTTCTATGATTTCAGCTTCCCCGTTCCTCCTGAATTTCGATGCCCCATTTCCACCGAGTTGATGATTCCTCCTTTCTGTTTTCATTCATTGATGTGTTGTTGCCAAATGCAGACTTATGATCGGGCATACATTCAGAGGTGGTTGGATGAAGGGCACAGAACATGCCCTCAAACCCAACAAGTCCTTTCTCACACTAATCTTACTCCAAATTACTTGGTCCGGGACATGATTGCGCAGTGGTGTAAAGAGCATGCAATTGAGATGCCAAAGCCGGTTCAGGACATCAACCAAGTAGTAAGTAATGCGGATAGAGACCACTTGGATTCATTACTTCATAAGCTGTCATTGTCTGTCCCTGATCAGAAAGAAGCTGCAAGAGAGCTTCGCCTCCTAACAAAGAGAATGCCTTCCTTTAGAACCCTCTTTGGGGAGTCGGTTGATGTGATTCCGCAGTTGCTCAGTCCATTATCGCCTAATACGGCTCATGTTCACCCCGATCTCCATGAGGACTTGATTACAACTATTCTAAATCTCTCGATTCAAGACGATAATAAGAAAGTATTTGGAGAGGATCCAACTGTCATTGCTCTTCTCATTGATGCCTTGAAATCCGGAACAATTCAAACAAGGAGCAATGCCGCAGCAGCCATTTTCACATTATCGGCTCTTGACTCCAACAAGCACATCATTGGAAAGTCTGGAGCCATCAAACATTTGCTTGACCTTTTAGAGGAGGGACAGCCATTAGCCGTGAAAGATGCTGCCTCAGCTATATTCAACCTATGTCTTGTGCACGAGAATAAAGGGAGGACCGTGAGAGAAGGTGCAGTCCGGGTCATTCTGAAGAAGATCATGGACCACATTCTAGTTGATGAGTTGCTCGCTATATTGGCACTCCTTTCCAGCCATCCCAAGGCCATTGAAGAAATGGGGGATCTTGGAGCTGTAGCTTTCTTGCTGGCTATCATAAGGGAGGGCACGTCAGAGCGAACCAAGGAGAATTGTGTTGCAATTTTATATACAATCTGTTACGGTGATAGAACAAAGTTGAAGGAAGTTAGAGAAGAAGAAAAAGCCAACGGTACCCTGTCTAAACTTGCACGACACGGGACTTCAAGGGCAAAAAGGAAGGCTAATGGAATTCTTGAGAGGCTCAATCGATCACCCTGCTTAACACACACTGCTTAA 1383 0.4685 MARRERGLSASAADGGGGKAAELKEKLRGLVKAILEDDDYTTRHAEDAIATLSTLRDLKRASPSSFYDFSFPVPPEFRCPISTELMIPPFCFHSLMCCCQMQTYDRAYIQRWLDEGHRTCPQTQQVLSHTNLTPNYLVRDMIAQWCKEHAIEMPKPVQDINQVVSNADRDHLDSLLHKLSLSVPDQKEAARELRLLTKRMPSFRTLFGESVDVIPQLLSPLSPNTAHVHPDLHEDLITTILNLSIQDDNKKVFGEDPTVIALLIDALKSGTIQTRSNAAAAIFTLSALDSNKHIIGKSGAIKHLLDLLEEGQPLAVKDAASAIFNLCLVHENKGRTVREGAVRVILKKIMDHILVDELLAILALLSSHPKAIEEMGDLGAVAFLLAIIREGTSERTKENCVAILYTICYGDRTKLKEVREEEKANGTLSKLARHGTSRAKRKANGILERLNRSPCLTHTA 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst6g00336 460 SUPERFAMILY ARM repeat 180 450 IPR016024 -
Arst6g00336 460 PANTHER U BOX DOMAIN-CONTAINING 37 450 - -
Arst6g00336 460 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 71 152 IPR013083 -
Arst6g00336 460 Pfam Armadillo/beta-catenin-like repeat 291 327 IPR000225 GO:0005515
Arst6g00336 460 SMART arm_5 368 409 IPR000225 GO:0005515
Arst6g00336 460 SMART arm_5 288 328 IPR000225 GO:0005515
Arst6g00336 460 SMART arm_5 246 287 IPR000225 GO:0005515
Arst6g00336 460 ProSiteProfiles U-box domain profile. 72 152 IPR003613 GO:0004842|GO:0016567
Arst6g00336 460 FunFam RING-type E3 ubiquitin transferase 162 455 - -
Arst6g00336 460 CDD RING-Ubox_PUB 74 132 IPR045210 -
Arst6g00336 460 SMART Ubox_2 76 145 IPR003613 GO:0004842|GO:0016567
Arst6g00336 460 Pfam U-box domain 73 150 IPR003613 GO:0004842|GO:0016567
Arst6g00336 460 Gene3D - 209 352 IPR011989 -
Arst6g00336 460 SUPERFAMILY RING/U-box 64 156 - -
Arst6g00336 460 Gene3D - 353 454 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst6g00336 Arst-Chr6 2967908 2970396 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst6g00336 141 460 U-box Gene Family AT3G07360 58.359 3.12e-125 365
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst6g00336 - - gmx:100806619 634.024
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst6g00336 6 2967908 2970396 Arst6g00336 6 2967908 2970396 ECH