Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst6g00312 ATGTGCAGAAAAACTGTGATATGCAAAGTTCGCGAACCCGGTGTTGGTCATACTCTTAATGCAGAAACAACACCCAAGGTTGTTCGTGTTTCAGTAATGGATCCGGAGATCACTGATTCTTCGAGTGACGAGGAGGAATATCAACAGTATCAAGGACGACGAACCAAAGTGAATTCGAAACACATTGTAAACGAGATAAGAATTTTGTATCCGCCATCTCACAACACCACCAAGGTGCAAAGATCTAAACAGCAACAACAACAGAACAAGGGCAAAAAAGTGGTTGTAGCTGCCATGAAAGCTTCTTCTTCTTGTTCTCAAGAGGGTAGGAAGCTACGCGGCGTTAGGCAAAGGCCATGGGGAAGATGGGCCGCGGAGATCCGAGACCCTGTGAAGCGTACGAGGTTGTGGTTAGGAACCTACGACACTGCCGAAGAAGCCGCCATGGTTTATGACAGAGAAGCCATTCGCCTTCGAGGTTCTCATGCTCAAACTAATTTCCTCAAGCCTCCAAAGGAGGAAGAATATGATGAACAAGTTTTTGATATCAACAATATGAAGAACATGCCTTCTCCTACTTCTCCTACTTCTCCCACTTCTGTTCTTCTATTTAAGTCTGATGGATCTGGAAGTAAGGTTTCAGGAGAGGATCAAAGCGAGTTCAGAGATGAATCTCCTTCTTCTTCCTATTTTCAGGATGCATTGTTTTTAGATTCACCTTCTATTGATTTTTGTTTATCGGATTTTGAGACTCCTCCCCCAATATTTCTTGATGAAACTTGCCTACCCCATCTTATTTTCAGTGACAGCAATTTCAGTGATGCTACCATTGACCAGTCTATTGAATTATGTAATTTCGATTTAGATGATTACTTTTGCAGTGATCAAGAGGAAGCTTTTCATGTTTAG 909 0.4235 MCRKTVICKVREPGVGHTLNAETTPKVVRVSVMDPEITDSSSDEEEYQQYQGRRTKVNSKHIVNEIRILYPPSHNTTKVQRSKQQQQQNKGKKVVVAAMKASSSCSQEGRKLRGVRQRPWGRWAAEIRDPVKRTRLWLGTYDTAEEAAMVYDREAIRLRGSHAQTNFLKPPKEEEYDEQVFDINNMKNMPSPTSPTSPTSVLLFKSDGSGSKVSGEDQSEFRDESPSSSYFQDALFLDSPSIDFCLSDFETPPPIFLDETCLPHLIFSDSNFSDATIDQSIELCNFDLDDYFCSDQEEAFHV 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst6g00312 302 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 24 208 - -
Arst6g00312 302 CDD AP2 111 167 IPR001471 GO:0003700|GO:0006355
Arst6g00312 302 Pfam AP2 domain 111 160 IPR001471 GO:0003700|GO:0006355
Arst6g00312 302 Gene3D AP2/ERF domain 111 169 IPR036955 GO:0003700|GO:0006355
Arst6g00312 302 SMART rav1_2 111 174 IPR001471 GO:0003700|GO:0006355
Arst6g00312 302 ProSiteProfiles AP2/ERF domain profile. 111 168 IPR001471 GO:0003700|GO:0006355
Arst6g00312 302 MobiDBLite consensus disorder prediction 185 226 - -
Arst6g00312 302 MobiDBLite consensus disorder prediction 185 215 - -
Arst6g00312 302 FunFam Ethylene-responsive transcription factor 2 111 169 - -
Arst6g00312 302 SUPERFAMILY DNA-binding domain 111 167 IPR016177 GO:0003677
Arst6g00312 302 PRINTS Ethylene responsive element binding protein signature 112 123 IPR001471 GO:0003700|GO:0006355
Arst6g00312 302 PRINTS Ethylene responsive element binding protein signature 134 150 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst6g00312 Arst-Chr6 2808306 2809426 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst6g00312 4 206 AP2-EREBP Transcription Factor Family AT4G27950 41.429 3.24e-38 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Arst6g00312 AP2 9e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst6g00312 - - adu:107491972 586.26