LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Arst6g00281	ATGAATGCAAGGGAACCAAAATTTGTTCGGTTTGAAGACTGGAGGTCAACATCATCGGAGCAAGAGAGTTCTGTTAATAATGGATATAAGGAAAGAAAAGGTATGCCAAGTGTGGGTGCTGTTTTGAAGAGTATTGGAAGAAAACTGGAGAGTGGTTCAGAAAAGTTCAAGAACTTGAGGAAACCTTCAACTGTTCATCCTGTAAGTGATAGACCAAAAGAGAAACTGGCTTCTAGAAGAAGCAACATTCTTGATCCACAAGGACGAACCCTTGAAAAATGGAACAAGATTTTTGTGATCACATGTGTGATGGCAATCTCCGTGGATCCGCTCTTCTTTTACATTCCAGTAATCAATGACAAAGACAAATGTCTGAATTTGGATGGCACGTTGCGAATCACCACTAGTGTTCTTCGAACATTCTTTGATCTTTTCTACATTCTTCGCATAATCTTTCAGTTTCGAACAGGGTTTATTGCCCCGTCTACTCGTGTTTTTGGAAGGGGTGAGGTGAACAATAATCCGGTGGCTATAATGAAAAGATACTTAAGTTCATACTTCATCATTGACATCCTCTCTATTATTCCAATTCCGCAGGTGCTGGTTTTAGCTGTAACTCCAAAGATGAAAAGCTCACCGTTTTTAGCAAAGGACTTGTTGAAGTATGTAATATTGGTCCAATATGTGCCAAGACTTCTGCGGATATGGCCATTATTCAGAGAAGTAACGAGAACTTCTGGTATATTGACCGAGACTGCATGGGCTGGAGCTGCTTTTAATCTTGGTCTTTATATGCTAGCAAGTCATGTTGTTGGAGCTAACTGGTATATGCTTTCAGTAGAATCAGAGGCAAGATGCTGGCGCAAAGTGATGGAAAATGATAGGCACTTTAAAGATTCATACCTGGGCTGTGGACCTAACAGAGGATTTGTCATATCACTTCTCAGTAAAAATACTACTTGCCCTTTCATTGACCCTGATCAAAACCAAGACCCAAATGCCTTTGATTTTGGAATATTCAATGATGCTTTAGAATCATCTGTGGTGAATTCCGAAACAGATTTTCTTAAGAAGTTCTTCTACTGCTTTTGGTGGGGTTTACGCAATTTGAGTTCTGTTGGACAAAACCTCAAGACAAGCACCTACATTGTGGAGATACTCTTTGCCATCTTCATAGCCATTGCTGGATTGGTTTTATTTGCATTACTTATTGGAAACATGCAGAAATATTTGCAATCAACAACTGTTAGAGTTGAGGAGATGAGAGTCAAGAGGCGCGACGCAGAAAGGTGGATGTCTCATCGTATGCTTCCTGAGAGACTGAGGGACAGAGTTAGACGGTATGAACAATACAAATGGCAACAAAATAGGGGTGTTGAGGAGGAGGCATTAATTCGCACCCTCCCTAAAGATCTAAGGAGGGACATAAAGCGTCATCTCTGCTTGGCTTTAGTTAAAAAAGTGCCAATATTTGAGAAAATGGATGAGCAGTTGTTGGATGCAATGTGTGATAGACTGAAGCCGGTCCTGTATACAGAAAAGAGCTACATTGTTCGCGAAGGAGATCCGGTTGATGAGATGCTTTTTGTCATGCGTGGAAACCTCGCTTCCATGACAACAAACGGTGGAAGAACTGGTTTCTTCAACTACACGGTTCTTGAGGCCGGTCAGTTCTGTGGCGAAGAGCTGTTAACATGGGCCCTGGATCCTCACTCCTCCACAAATCTTCCCACCTCAACCAGAACAGTAGAAACCATATCAGAAGTTGAAGCCTTTGCTCTCATGGCCGATGACTTGAAGTTTGTTGCTTCCCAATTTCGACGTCTTCAGAACAAACAACTTCAGCACACTTTCAGGTACTATTCGATGCAATGGAAGACATGGGCTGCCTGTTTCATACAAGTAGCATGGCGTCGATACTGGAAAAAGAAGGTTGAGAGGCAATTACGCGAGGCAGAAGACAGGCTACAAGGTGCCTTTGTAAATGAGGATGAATCCTCTCTAAGCCTTGGTGCAACCATATATGCATCACGGTTTGCTGCTAATGCATTGAGAAACTTGAGAGAAAACAGCGAACGCAACAAGAGAATGCCACAGAGACTACCTCTGCTTCCTCCAAAGCCCGCCGAGCCAGATTTCTCTACTCAGGAACACTAG	2157	0.4247	MNAREPKFVRFEDWRSTSSEQESSVNNGYKERKGMPSVGAVLKSIGRKLESGSEKFKNLRKPSTVHPVSDRPKEKLASRRSNILDPQGRTLEKWNKIFVITCVMAISVDPLFFYIPVINDKDKCLNLDGTLRITTSVLRTFFDLFYILRIIFQFRTGFIAPSTRVFGRGEVNNNPVAIMKRYLSSYFIIDILSIIPIPQVLVLAVTPKMKSSPFLAKDLLKYVILVQYVPRLLRIWPLFREVTRTSGILTETAWAGAAFNLGLYMLASHVVGANWYMLSVESEARCWRKVMENDRHFKDSYLGCGPNRGFVISLLSKNTTCPFIDPDQNQDPNAFDFGIFNDALESSVVNSETDFLKKFFYCFWWGLRNLSSVGQNLKTSTYIVEILFAIFIAIAGLVLFALLIGNMQKYLQSTTVRVEEMRVKRRDAERWMSHRMLPERLRDRVRRYEQYKWQQNRGVEEEALIRTLPKDLRRDIKRHLCLALVKKVPIFEKMDEQLLDAMCDRLKPVLYTEKSYIVREGDPVDEMLFVMRGNLASMTTNGGRTGFFNYTVLEAGQFCGEELLTWALDPHSSTNLPTSTRTVETISEVEAFALMADDLKFVASQFRRLQNKQLQHTFRYYSMQWKTWAACFIQVAWRRYWKKKVERQLREAEDRLQGAFVNEDESSLSLGATIYASRFAANALRNLRENSERNKRMPQRLPLLPPKPAEPDFSTQEH	718

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Arst6g00281	718	Gene3D	Helix hairpin bin	417	481	-	-
	Arst6g00281	718	FunFam	Cyclic nucleotide-gated ion channel 1	417	481	-	-
	Arst6g00281	718	MobiDBLite	consensus disorder prediction	1	17	-	-
	Arst6g00281	718	Gene3D	-	96	414	-	-
	Arst6g00281	718	SMART	cnmp_10	490	621	IPR000595	-
	Arst6g00281	718	MobiDBLite	consensus disorder prediction	1	32	-	-
	Arst6g00281	718	SUPERFAMILY	Voltage-gated potassium channels	85	412	-	-
	Arst6g00281	718	Pfam	Ion transport protein	94	418	IPR005821	GO:0005216\|GO:0006811\|GO:0016020\|GO:0055085
	Arst6g00281	718	Coils	Coil	642	662	-	-
	Arst6g00281	718	CDD	CAP_ED	490	621	IPR000595	-
	Arst6g00281	718	SUPERFAMILY	cAMP-binding domain-like	419	614	IPR018490	-
	Arst6g00281	718	MobiDBLite	consensus disorder prediction	690	718	-	-
	Arst6g00281	718	Gene3D	Jelly Rolls	488	608	IPR014710	-
	Arst6g00281	718	FunFam	Cyclic nucleotide-gated ion channel 1	488	606	-	-
	Arst6g00281	718	ProSiteProfiles	cAMP/cGMP binding motif profile.	490	574	IPR000595	-
	Arst6g00281	718	PANTHER	CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED	60	713	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Arst6g00281	Arst-Chr6	2510475	2514743	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Arst6g00281	1	717	Ion Channels	AT5G53130	62.672	0.0	899

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Arst6g00281	K05391		-	gmx:100797784	1066.22