LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Arst6g00274	ATGACGGAGTCACCGTCGGATAGGCGGTGTAAGCGCACCGCCGGCCCAAATTGGCGGTGCAGCGGGGTGGCGTCGCTGGGAAAATCGTTCTGCGAGAAACACTTGCAGCAGCGTGCGCTTCAAGACCAGAAACGCAGAATTAAGAGGAACGAAGGGAACGAATCAGAGCGCAGGTCCAACAAGACCAAGAGGAGGCTGTCGACCGCGGATGACGTCAGTGCCGGATCCGAATTGGAAGTTTCCGTGTCCGAATTGATTGAAAACTCCGTCAGAAAGAAAAAAAAGAACGAGACGAAGAAGAAGAAACCACTTGATCAAGAGAGTGTAAATGAGTGTGATATTCACGAGGACTCTGACAGGGGAATGATGAGCGTGAACGGTGTCAAGAAGGGTTCAGGAGTTGAAGATAAGAAACAAATGGGTAGCAAAAGCAACGAGGGTGGAAGTTTGATGTGTCATCAGTGCCAGAGGAATGATAAGAGTGGAGTTGTCTTTTGCTCAAAGTGCAACAGAAAACGCTACTGTTATGAATGCCTTGAGCGGTGGTACCCAGGTAAAACCCTGAAGGAAGTTGAGGAAGCATGTCCATTCTGTTTAGGCAATTGCAATTGCAAAGCCTGCTTGCGGGAGGTTCCGGTGCTTATGGACCGAGAGGTAAATTCCAGTGTCAAATTAAATCGACTGCGCTACTTACTCTATAAAGCCTTGCCTGTTCTGAGGCATATTCACAGGGAGCAAAGCTTAGAACTAGAGATTGAATCTAAAATAAGAGGTGAGCAACTGCAAGAAAAAGGCATAGCAAGAACAGAGCTAGACAAACGTGAGCGCTTATACTGTGACAATTGCAATACATCTATAATTGGGTTTTACCGGAGCTGCCCCAATCCCAGTTGCTCTTATGATCTATGTCTCATGTGTTGTCAAGAGCTTAGGGAGGGTTGCCAACCTGGAGGCATAGAAGCTGAAACATCCCAGGAACAATTTTCTGAGAGAGCTCGTAATCATGATTCATCAATAACTAAGAGTAAAAAACAAAGTAAAAGATATGGATGGGAGAGCCAGCTTGTGCCTACAAATTTTGATTTTCAAGCTGACATGTCCACCCCCTTCCCTGAATGGAATGCTAATACAGATGGTAACATTCCATGTCCACCAAAACAGCGTGGAGGATGTGGTACCACATTGCTAGAATTGAGACGTACTTTCAAATGTAACTGGGTAGTGAAATTGCTAAATAATGCTGAGGACCTCACCAGAGACTACACACCGCCTAATGTTGATATTACTGAAAAGTGCTCTTTATGTCAGATAAATACTATTGAAGGAAAAACCAATCTTGAAGCACGTAGGGCAGCATTCAGAGATGATGATAATGATAATTTCATATATAGCTCAAATGCCCGTGATATTTCTGATGATGAAATTGAGCATTTCCAGAGGCACTGGATGAGGGGAGAACCTGTTGTTGTGAGAAACATTCTAGATAAGACATCGGGTCTTAGCTGGGAGCCAATGGTTATGTGGAGGGCTTTAAGAGAAACAGGCTCCAAAGTGAAGTTTAAAGACGAAACTCGAAGTGTAAAAGCTATTGATTGCTTCGATTGGTGTGGGGTTGAGATCAATATTCACCAATTTTTCCAAGGCTACCTAGAAGGTCGAATGTATAACAATGGGTGGCCAGAAATGCTGAAATTGAAAGATTGGCCCACATCCACCACTTTTGAAGAGCGCTTGCCTAGGCATGGCACAGAGTTCCTCATGGCACTCCCCTACAGGGATTACACTGATCCAAAATCTGGGACTTTGAATTTTGCCTCTAAACTTCCTGATGACTCACTAAAGCCGGATTTAGGACCTAAAACATATATTGCTTATGGATTTTCTGATGAGCTTGGTAGAGGAGATTCTGTGACAAAGCTGCACTGTGATGTGTCAGATGCAGTCAATGTGTTGATGCATACAACCAAAGTGGAGATAGCTCCTTGGCGGAGAAAAATAATAAAAGAATTGCAGAAAAAATATGCCGAAGAAGACTCTCGTGAACTTTTATGTGAAGCTTTAGGAGATGCTGATGAAAGACCTAAATCTGAAGCATTGAGCCATGATCAGAAGGCAGACATTGGAATTGGTAATATTTCACCAACTAGCCACGTGGATCAGTGCATTCCATCTATATGTGAAGAAGGCAAGAGTCAGAAGTTAGAAACACATGATCTATCTGCAAGTAGCTTAGCTAGTAATATGAGCAATAAGGAAGACAGAATGAGGATTGATTTTATAGATGATAAGGAGCCTGATGGTCCTGAGCTGAGAGAGTCAAAACAAGGCCTGGAGAAAGATACTTTGCAAACTGAAGATGGAGCTGAGGTTGCCCTCGGTGGTGCTGTTTGGGACATCTTCCGCCGGCAAGATGTCCCTAAGCTAATTGAGTACTTAAGAAAGCACAAGAATGAATTCCGTCATATAAAAAATCATCCTGTAGATTCTGTTATACATCCTATTCATGATCAAACTCTGTTTTTAAATGAGAGGCATAAGAAACAGCTGAAAAAGGAGTTCAATGTTGAACCATGGACCTTTGAGCAACACCTTGGGGAGGCTGTCTTCATTCCAGCAGGATGTCCTCATCAAGTGAGAAACAGACAATGCCTATTAATTGGTGCTTTCATTGAGAGGAAATGGAGCCATGGCCCACGGAATCCGTTTGACCCGACTGGAGGAACTCACCTTGTCCAACACACAGGAGGTAACCACTCTTAA	2760	0.4366	MTESPSDRRCKRTAGPNWRCSGVASLGKSFCEKHLQQRALQDQKRRIKRNEGNESERRSNKTKRRLSTADDVSAGSELEVSVSELIENSVRKKKKNETKKKKPLDQESVNECDIHEDSDRGMMSVNGVKKGSGVEDKKQMGSKSNEGGSLMCHQCQRNDKSGVVFCSKCNRKRYCYECLERWYPGKTLKEVEEACPFCLGNCNCKACLREVPVLMDREVNSSVKLNRLRYLLYKALPVLRHIHREQSLELEIESKIRGEQLQEKGIARTELDKRERLYCDNCNTSIIGFYRSCPNPSCSYDLCLMCCQELREGCQPGGIEAETSQEQFSERARNHDSSITKSKKQSKRYGWESQLVPTNFDFQADMSTPFPEWNANTDGNIPCPPKQRGGCGTTLLELRRTFKCNWVVKLLNNAEDLTRDYTPPNVDITEKCSLCQINTIEGKTNLEARRAAFRDDDNDNFIYSSNARDISDDEIEHFQRHWMRGEPVVVRNILDKTSGLSWEPMVMWRALRETGSKVKFKDETRSVKAIDCFDWCGVEINIHQFFQGYLEGRMYNNGWPEMLKLKDWPTSTTFEERLPRHGTEFLMALPYRDYTDPKSGTLNFASKLPDDSLKPDLGPKTYIAYGFSDELGRGDSVTKLHCDVSDAVNVLMHTTKVEIAPWRRKIIKELQKKYAEEDSRELLCEALGDADERPKSEALSHDQKADIGIGNISPTSHVDQCIPSICEEGKSQKLETHDLSASSLASNMSNKEDRMRIDFIDDKEPDGPELRESKQGLEKDTLQTEDGAEVALGGAVWDIFRRQDVPKLIEYLRKHKNEFRHIKNHPVDSVIHPIHDQTLFLNERHKKQLKKEFNVEPWTFEQHLGEAVFIPAGCPHQVRNRQCLLIGAFIERKWSHGPRNPFDPTGGTHLVQHTGGNHS	919

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Arst6g00274	919	MobiDBLite	consensus disorder prediction	100	123	-	-
	Arst6g00274	919	Gene3D	Cupin	462	886	-	-
	Arst6g00274	919	ProSiteProfiles	JmjC domain profile.	597	907	IPR003347	-
	Arst6g00274	919	PANTHER	JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN	40	882	IPR045109	GO:0032454\|GO:0033169
	Arst6g00274	919	Pfam	WRC	7	44	IPR014977	-
	Arst6g00274	919	MobiDBLite	consensus disorder prediction	37	70	-	-
	Arst6g00274	919	ProSiteProfiles	WRC domain profile.	4	52	IPR014977	-
	Arst6g00274	919	MobiDBLite	consensus disorder prediction	324	345	-	-
	Arst6g00274	919	SMART	cupin_9	578	895	IPR003347	-
	Arst6g00274	919	MobiDBLite	consensus disorder prediction	37	74	-	-
	Arst6g00274	919	MobiDBLite	consensus disorder prediction	90	145	-	-
	Arst6g00274	919	MobiDBLite	consensus disorder prediction	897	919	-	-
	Arst6g00274	919	ProSiteProfiles	Zinc finger RING-type profile.	152	198	IPR001841	-
	Arst6g00274	919	SUPERFAMILY	Clavaminate synthase-like	474	881	-	-
	Arst6g00274	919	MobiDBLite	consensus disorder prediction	761	781	-	-
	Arst6g00274	919	MobiDBLite	consensus disorder prediction	326	345	-	-
	Arst6g00274	919	Pfam	JmjC domain, hydroxylase	792	881	IPR003347	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Arst6g00274	Arst-Chr6	2412194	2418823	Dispersed/Tandem

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	Jumonji	Arst6g00274		JmjC	1.6e-13	CL0029

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Arst6g00274	K15601		-	cave:132187182	1008.82