Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst6g00271 ATGGATTTGGAACCAGAAACTCGACGGAAAATCGAGGACATGGTGATGGATTTACTCAAGCAATCCAACATAGAAGAGACTACTGAGTTCAGCATCCGAGTCGCCGCATCCGAGCGACTCGGCATCGATCTCTCCGATCCCAACCGCAAGCACTTCGTCAGAAACGTCGTCGAGTCTTATCTTCGAACCGTCGCTGCCGAAGACGCCACCGTTGCAGCCGAACAGAAACCGCCGGAACTGATCGCTCCTCCGGAGGAGTCCATAGAAGCGGCGTTGCAGTTGCCGAAGCCAAGTACGGAGGTTAAGGATGACTGTGATCAAGTCATTTTCCAGCTGTCAAACAAAAGGAATGTGGTGGTTAAAAAGTTCAAAGGGACAACATTGGTGTCAATTAGGGAGTTTTTCCAGAAAGATGGAAAACAGATTCCCACTTCCAAAGGGATAAGTTTATCATCTGAACAATGGTCAACCTTCAAGAAGAATGTGCCAGCTATTGAGGAAGCTATTACAAAGTTGGAAGGAAAGATGAAATCTGAGCTTCATGGTAAGGAAAATGGAGATGCCTATAATTCAGTTGTTGATGTGGCTCCTCCTCTTGAGCATGTCCCTGTTGAGGTCAGCCGTTTTGATGGGAAAAATTATCAATTATGGGCTCAGCAGATGGAATCACTTTTGAAACAGTTAAAGATTGATTATGTGCTTACTGAACTAAGCCCAAATGCTGTGCTTGGTGAAAATTCTAGTGCTGAAGAAATTGCTAGAACCAAGAATGCAGAAAGGAGATGGGTGAATGATGATTTAATGTGCCGTCGCAATATCTTGACTCATTTATCTGATAGTCTATTTTGTCTCTATGCAAACAGAAAAATGAGTGCTAAGGAGTTATGGGAAGATTTAAAATTGGTTTATCTGTATGAGGAACATGGAAGCAAGAGAGCGCAGGTGAAAAAGTATCTTGAGTTTCAGATGGTTGACGAGAGACCAATTGTTGAGCAAATCCAAGAATTTAATAGCATTGCAGATTCACTCGTTGCTGCTGGAATGTTTCTCGATGAAAACTTTCATGCGAGTGCCATCATTTCAAAGCTCCCACCATCCTGGAAGGACTTCTGCATCAAGTCAATGCGCGAGGAGTATCTCCCTTTATGGAGGCTAATTGATTGTATTAGGATGGAGGAAGAATCTCGCAACGGATTCAAACGAGTTGGTGAACCTTATAGTAGGATAGGATTTAACCACTCCAATAAAGGTGGACCAAGGGAAAGTGACAATAAGTTTATGCATAGGAATAAGTCAGAGAGTAATGGCAAGAGCATAGCCTGTTATATTTGTGGCAAGAAGGGGCATCTTTCTAAACACTGCTGGAGAAGATATGACAAACTAGGTAATGAAAGAAAGGCCGAAGATGTATGCATACCTCAAGAAGTTAACATGGTGGGGGGTTGTTAG 1449 0.4306 MDLEPETRRKIEDMVMDLLKQSNIEETTEFSIRVAASERLGIDLSDPNRKHFVRNVVESYLRTVAAEDATVAAEQKPPELIAPPEESIEAALQLPKPSTEVKDDCDQVIFQLSNKRNVVVKKFKGTTLVSIREFFQKDGKQIPTSKGISLSSEQWSTFKKNVPAIEEAITKLEGKMKSELHGKENGDAYNSVVDVAPPLEHVPVEVSRFDGKNYQLWAQQMESLLKQLKIDYVLTELSPNAVLGENSSAEEIARTKNAERRWVNDDLMCRRNILTHLSDSLFCLYANRKMSAKELWEDLKLVYLYEEHGSKRAQVKKYLEFQMVDERPIVEQIQEFNSIADSLVAAGMFLDENFHASAIISKLPPSWKDFCIKSMREEYLPLWRLIDCIRMEEESRNGFKRVGEPYSRIGFNHSNKGGPRESDNKFMHRNKSESNGKSIACYICGKKGHLSKHCWRRYDKLGNERKAEDVCIPQEVNMVGGC 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst6g00271 482 SUPERFAMILY Retrovirus zinc finger-like domains 422 461 IPR036875 GO:0003676|GO:0008270
Arst6g00271 482 SUPERFAMILY ssDNA-binding transcriptional regulator domain 109 171 IPR009044 GO:0003677|GO:0006355
Arst6g00271 482 Gene3D Transcriptional Coactivator Pc4; Chain A 100 177 IPR009044 GO:0003677|GO:0006355
Arst6g00271 482 Pfam gag-polypeptide of LTR copia-type 262 397 - -
Arst6g00271 482 Pfam DEK C terminal domain 7 61 IPR014876 -
Arst6g00271 482 ProSiteProfiles DEK C-terminal (DEK-C) domain profile. 5 62 IPR014876 -
Arst6g00271 482 Pfam Transcriptional Coactivator p15 (PC4) 110 161 IPR003173 GO:0003677|GO:0006355
Arst6g00271 482 MobiDBLite consensus disorder prediction 410 431 - -
Arst6g00271 482 FunFam RNA polymerase II transcriptional coactivator KELP 101 173 - -
Arst6g00271 482 ProSiteProfiles Zinc finger CCHC-type profile. 441 454 IPR001878 GO:0003676|GO:0008270
Arst6g00271 482 PANTHER RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR 5 174 IPR045125 GO:0003713|GO:0060261
Arst6g00271 482 SMART c2hcfinal6 440 456 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst6g00271 Arst-Chr6 2403116 2406231 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Coactivator p15 Arst6g00271 Retrotran_gag_2 3.7e-15 CL0523
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst6g00271 - - gmx:100800963 565.074