Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst6g00268 ATGGAGGTGGGGATGGGGCGCGTGGTGTGGGACGACGACGATAAAGCCACGGTAGCGGCGGTTTTGGGAGCACGCGCTTTGGATTTCTTGGTGACAAACGCGGTATCCAATGAGAACCTGTTAGTGGCAGTTGGGAGCGACGAGACTCTTCAGAACAAGCTTTCCGATCTGGTGGACCGTCCCAACCTCTCGAATTTCAGTTGGAATTACGCCATTTTCTGGCAGTTATCTCAGTCCAAATCCGGCGACTGGGTTCTCGGATGGGGCGACGGTTCCTGCAGGGAGCCCAACGATGCAGAAGAAGGCGGCGGAGGTGGTGTTAGGGGAGGGATTCTGAGTCTCCGAATCGACGACGAGATGCAGCAGAGGATGAGGAAGAGGGTTTTGCAAAAGCTACACACTACGTTCGGTGGCTCCGACGAGGACAATTACGCTTTTGGCCTCGACCGCGTGACGGACACGGAGATGTTCTTTCTTGCTTCCATGTACTTCTCGTTCCCCCGCGGCCACGGTGGCCCAGGTAAGTGCTTTGCGTCCGGGAAGCACCTGTGGCTCTCGGACGCCATGAAATCCAACTCTGATTACTGCGTGCGCTCTTTCTTGGCTAAAAACGCTGGCTTTCAGACTATTATTTTGGTTCCTACCGATTTGGGAGTGTTGGAGTTGGGTTCAGTGAGGACTCTGCCGGAGAATTTTGAGCTCTTGCAGGCCATCAAATCGGTGTTTTCGTCTCAGGCTACAACCACCTACCCCATGGCTAATAGTAAGCCTCTTATGCCATTGACAGTGATGAGTGAAAAGAGGGATGAGAATAATAATGCTCTTTTTCCTGGTTTGGCAATCGGGGACCATACTCACCAGAACAATAACAAGGTTGTTGAGGGAGTGCCAAAGGTTTTTGGAAGCGCTGTGATTTCTGGTAGGTCCCATTTCAGGGAGAAGCTTGCTGTTAGGAAGATGGAGGAGAGGCCTTGGGTACCCCACCACCAACCCAATGGGAATAATAATGCCAATGCCAATGCCAATGCCAATGCCATTAACTTCCCCAATGGTCCTCCTCGCAATGGTCTTCATCACGGGTCTGCTTGGGTTGGTGGAGCAGCAGTAGGAGGGAATAGTAATAATAGTAACTGTAATAATCATACTCAAGGTGGTGTGAGGCAGGCTGCTGCTGGTGGCGCTGCTGAGATTTTCGCTCCTAGGTCGTCCGCGTGCAATGTGTCTGCCGAGTTGGCCAATGGTGGTGTGAGGCCGCAGGATTTTAGGATTAGCAGCTATCAACCCCAAAGGCAGGTGCAAATGCAGATTGATTTCTCCGGAGCCACTTCCAGACCTTCTGTGAGGCCTGTGGTTGCTGATTCGGAGCTTTCTGATGTTGAGGCCTCGTGCAAGGAGGAGCAGCCAAGCATGGCTGACGAGAGAAGGCCCAGGAAGCGGGGAAGGAAGCCTGCTAATGGTAGGGAGGAACCCCTCAATCACGTGGAAGCTGAGAGGCAGAGGCGCGAGAAGCTCAACCAGAGGTTCTATGCGCTGCGGTCTGTGGTGCCCAATATATCCAAGATGGACAAGGCGTCATTGCTTGGTGACGCCATTGCCTACATCAATGAGCTCCAAGCGAAGCTCAAGATGATGGAATCTGAGAGGGAGAGACATGGAGGAAGCACTTCTTTTAGGGAGCCGGAGGCAATGCAAAGAGCAGCAGAAAATCACCATGGTGGTGGAAATGCTGATGTGGATATTGAAGCAGCACAGGATGAGGTGATTGTTAGGGTGAGTTGCCCTCTTGATTCTCATCCGGTTTCAAGAGTGATCCAAACATTCAAAGACGCACAAATCAATGTTATTGATTCAAAACTCGCAGCTGCAAATGACACCATATTTCACACCTTTGTAATTAAGTCCCAACAAGGATGTGAACAGCTCACAAAGGACATGTTGATTGCAGCACTCTCCCCAGAATCCAATTCTTTACAGCAATTGTCATCTGTTGGTGGGTAG 1998 0.513 MEVGMGRVVWDDDDKATVAAVLGARALDFLVTNAVSNENLLVAVGSDETLQNKLSDLVDRPNLSNFSWNYAIFWQLSQSKSGDWVLGWGDGSCREPNDAEEGGGGGVRGGILSLRIDDEMQQRMRKRVLQKLHTTFGGSDEDNYAFGLDRVTDTEMFFLASMYFSFPRGHGGPGKCFASGKHLWLSDAMKSNSDYCVRSFLAKNAGFQTIILVPTDLGVLELGSVRTLPENFELLQAIKSVFSSQATTTYPMANSKPLMPLTVMSEKRDENNNALFPGLAIGDHTHQNNNKVVEGVPKVFGSAVISGRSHFREKLAVRKMEERPWVPHHQPNGNNNANANANANAINFPNGPPRNGLHHGSAWVGGAAVGGNSNNSNCNNHTQGGVRQAAAGGAAEIFAPRSSACNVSAELANGGVRPQDFRISSYQPQRQVQMQIDFSGATSRPSVRPVVADSELSDVEASCKEEQPSMADERRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRSVVPNISKMDKASLLGDAIAYINELQAKLKMMESERERHGGSTSFREPEAMQRAAENHHGGGNADVDIEAAQDEVIVRVSCPLDSHPVSRVIQTFKDAQINVIDSKLAAANDTIFHTFVIKSQQGCEQLTKDMLIAALSPESNSLQQLSSVGG 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst6g00268 665 MobiDBLite consensus disorder prediction 438 499 - -
Arst6g00268 665 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 488 537 IPR011598 GO:0046983
Arst6g00268 665 SMART finulus 494 543 IPR011598 GO:0046983
Arst6g00268 665 FunFam Transcription factor bHLH13 481 554 - -
Arst6g00268 665 Coils Coil 534 554 - -
Arst6g00268 665 PANTHER MYC 36 649 IPR045084 GO:0003700|GO:0006355
Arst6g00268 665 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 50 242 IPR025610 -
Arst6g00268 665 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 491 553 IPR036638 GO:0046983
Arst6g00268 665 CDD bHLH_AtAIB_like 485 550 - -
Arst6g00268 665 MobiDBLite consensus disorder prediction 458 499 - -
Arst6g00268 665 Pfam Helix-loop-helix DNA-binding domain 492 538 IPR011598 GO:0046983
Arst6g00268 665 Gene3D - 481 551 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst6g00268 Arst-Chr6 2348331 2351084 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst6g00268 3 664 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G01260 48.879 0.0 563
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Arst6g00268 bHLH-MYC_N 3.9e-52 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst6g00268 - - adu:107491937 1243.41